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BaseInfo

ncRNA ID novel_zma_miR5905
Species Zea mays
Class miRNA
Genome position Chr2:163134729-163134821 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 23
Mature sequence(if miRNA) 1 - GAUUAUAUAAUCUGGUAGAUUAU - 23
Stem-loop(if miRNA) --      U   U   -             C              AG
  AAUCUG CUA AUU UAUAAUCCAACAA UUUUGAACUAACUU  U
  |||||| ||| ||| ||||||||||||| ||||||||||||||  U
  UUAGAU GGU UAA AUAUUAGGUUGUU AAAACUUGAUUGAA  U
UA      -   C   U             A              AA
Stem-loop sequence AAUCUGUCUAUAUUUAUAAUCCAACAACUUUUGAACUAACUUAGUUUAAAAGUUAGUUCAAAAAUUGUUGGAUUAUAUAAUCUGGUAGAUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069856.2
ncRNA:23   UAUUAGAUGG-UCUAAUAUAUUAG   1
  ||||||||||-|||||||||||||
targets:633   AUAAUCUACCCAGAUUAUAUAAUC   656

3.0 Zea mays full-length cDNA clone ZM_BFb0305N24 mRNA, complete cds NA coding protein psRNATarget
LQ239186.1
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  ||||||||-|||||||||||||||
targets:15   AUAAUCUAUCCAGAUUAUAUAAUC   38

2.0 Sequence 5181 from Patent EP2985353 NA coding protein psRNATarget
HI407056.1
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  ||||||||-|||||||||||||||
targets:15   AUAAUCUAUCCAGAUUAUAUAAUC   38

2.0 Sequence 5181 from Patent EP2074227 NA coding protein psRNATarget
JB167517.1
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  ||||||||-|||||||||||||||
targets:15   AUAAUCUAUCCAGAUUAUAUAAUC   38

2.0 Sequence 5181 from Patent EP2559767 NA coding protein psRNATarget
EZ104714.1
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  ||||||||-|||||||||||||||
targets:48   AUAAUCUAGCCAGAUUAUAUAAUC   71

2.0 TSA: Zea mays contig40371, mRNA sequence NA coding protein psRNATarget
XM_008657785.2
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  ||||||||-=||||||||||||||
targets:2280   AUAAUCUAGUCAGAUUAUAUAAUC   2303

3.0 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA NA coding protein psRNATarget
BT066158.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  ||||||||=-||||||||||||||
targets:2344   AUAAUCUAUUCAGAUUAUAUAAUC   2367

3.0 Zea mays full-length cDNA clone ZM_BFc0040P17 mRNA, complete cds NA coding protein psRNATarget
NM_001175758.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  ||||||||=-||||||||||||||
targets:2344   AUAAUCUAUUCAGAUUAUAUAAUC   2367

3.0 Zea mays Transducin/WD40 repeat-like superfamily protein (LOC100383087), mRNA NA coding protein psRNATarget
AY106954.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  ||||||||=-||||||||||||||
targets:1763   AUAAUCUAUUCAGAUUAUAUAAUC   1786

3.0 Zea mays PCO143990 mRNA sequence NA coding protein psRNATarget
BT038229.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  |||||||=|-||||||||||||||
targets:1073   AUAAUCUGCUCAGAUUAUAUAAUC   1096

3.0 Zea mays full-length cDNA clone ZM_BFb0218I20 mRNA, complete cds NA coding protein psRNATarget
XM_008653731.2
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  |||||||=|-||||||||||||||
targets:679   AUAAUCUGCUCAGAUUAUAUAAUC   702

3.0 PREDICTED: Zea mays Os07g0120600-like protein (LOC103631895), mRNA NA coding protein psRNATarget
DQ245842.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  |||||||=|-||||||||||||||
targets:602   AUAAUCUGCUCAGAUUAUAUAAUC   625

3.0 Zea mays clone 20787 mRNA sequence NA coding protein psRNATarget
BT016291.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  ||||||||=-||||||||||||||
targets:627   AUAAUCUAUUCAGAUUAUAUAAUC   650

3.0 Zea mays clone Contig124 mRNA sequence NA coding protein psRNATarget
EU945446.1
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  |||||||=-|||||||||||||||
targets:437   AUAAUCUGUCCAGAUUAUAUAAUC   460

3.0 Zea mays clone 273503 mRNA sequence NA coding protein psRNATarget
BT087765.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  =||||||=|-||||||||||||||
targets:1046   GUAAUCUGCUCAGAUUAUAUAAUC   1069

3.0 Zea mays full-length cDNA clone ZM_BFb0192M13 mRNA, complete cds NA coding protein psRNATarget
NM_001143614.2
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  =||||||=|-||||||||||||||
targets:1046   GUAAUCUGCUCAGAUUAUAUAAUC   1069

3.0 Zea mays Proline-rich protein 2 (LOC100217260), mRNA NA coding protein psRNATarget
EU971425.1
ncRNA:23   UAUUAGAUG-GUCUAAUAUAUUAG   1
  ||||||*||-||||||||||||||
targets:479   AUAAUCCACUCAGAUUAUAUAAUC   502

3.0 Zea mays clone 364446 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU976590.1
ncRNA:23   UAUUAGAU-GGUCUAAUAUAUUAG   1
  |||||||*-|||||||||||||||
targets:1634   AUAAUCUCUCCAGAUUAUAUAAUC   1657

3.0 Zea mays clone 984325 mRNA sequence NA coding protein psRNATarget
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