Search result

BaseInfo

ncRNA ID	novel_zma_miR5899
Species	Zea mays
Class	miRNA
Genome position	Chr2:194781504-194781617 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	91 - GUGCUCAUUUUUACCCUUAGUUGU - 114
Stem-loop(if miRNA)	--                               U            C    ---   UC   GUGCUCAUUUUUACCCUUAGUUGUGUUUUUU GCUCAGUUUUGC CUUC   UGU  U   ||||||||||||||||||||||||||||||| |||||||||||| ||||   |||   CAUGAGUAAAAAUGGGAAUCAACACAAAAAA CGAGUCAAAACG GAAG   ACG  A CA                               -            U    UUC   AU
Stem-loop sequence	GUGCUCAUUUUUACCCUUAGUUGUGUUUUUUUGCUCAGUUUUGCCCUUCUGUUCUAUAGCACUUGAAGUGCAAAACUGAGCAAAAAACACAACUAAGGGUAAAAAUGAGUACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061928.1	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   |||||||||||||||||||||||| targets:553   ACAACUAAGGGUAAAAAUGAGCAC   576 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679472.2	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   ||=|||||||||||||||*||||| targets:2663   ACGACUAAGGGUAAAAAUAAGCAC   2686 Target Full Sequence	1.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679473.2	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   ||=|||||||||||||||*||||| targets:2866   ACGACUAAGGGUAAAAAUAAGCAC   2889 Target Full Sequence	1.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT088229.1	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   |==||||||||||||||||||*|* targets:1443   AUGACUAAGGGUAAAAAUGAGGAA   1466 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0083G18 mRNA, complete cds	NA	coding protein	psRNATarget
BT062332.1	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   |==||||||||||||||||||*|* targets:1761   AUGACUAAGGGUAAAAAUGAGGAA   1784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0282G11 mRNA, complete cds	NA	coding protein	psRNATarget
BT055615.2	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   ||=|||||*|||||||*||||||| targets:108   ACGACUAAAGGUAAAACUGAGCAC   131 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0072O22 mRNA, complete cds	NA	coding protein	psRNATarget