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BaseInfo

ncRNA ID	novel_zma_miR5898
Species	Zea mays
Class	miRNA
Genome position	Chr2:220147368-220147446 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343
Length	24
Mature sequence(if miRNA)	56 - AUUCCUUGUGUGCCACUGAGUGAC - 79
Stem-loop(if miRNA)	--            C    G   GA     -AA      U   AUUCCUUGUGUG CACU AGU  CAUAU   GUAUAU U   |||||||||||| |||| |||  |||||   |||||| U   UAAGGAAUACAC GUGA UCG  GUAUA   UAUGUG U AG            A    -   GG     CAG      U
Stem-loop sequence	AUUCCUUGUGUGCCACUGAGUGACAUAUAAGUAUAUUUUUUGUGUAUGACAUAUGGGGCUAGUGACACAUAAGGAAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ099368.1	ncRNA:22   GUGAGUCACCGUGUGUUCCUUA   1   |=|||||||||||||||||=|| targets:1   CGCUCAGUGGCACACAAGGGAU   22 Target Full Sequence	1.5	TSA: Zea mays contig35023, mRNA sequence	NA	coding protein	psRNATarget
NM_001147730.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCC-UUA   1   |*|||||||||||||||||||-||| targets:728   GCCACUCAGUGGCACACAAGGGAAU   752 Target Full Sequence	3.0	Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA	NA	coding protein	psRNATarget
BT040698.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCC-UUA   1   |*|||||||||||||||||||-||| targets:728   GCCACUCAGUGGCACACAAGGGAAU   752 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCCUUA   1   ||||||||*|*||||||||||||| targets:4297   GUCACUCAAUAGCACACAAGGAAU   4320 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945728.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCCUUA   1   |*||||=|*||||||||||||||| targets:1094   GCCACUUAAUGGCACACAAGGAAU   1117 Target Full Sequence	2.0	Zea mays clone 283792 mRNA sequence	NA	coding protein	psRNATarget
XM_008655872.2	ncRNA:24   CAGUGAGUCACCGUGUGUUCCUUA   1   |*||||||*||||||||||||=|| targets:1171   GCCACUCAAUGGCACACAAGGGAU   1194 Target Full Sequence	2.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA	NA	coding protein	psRNATarget
EU956996.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCCUUA   1   ***=**||||||||=||||||||| targets:1624   UGGGGCCAGUGGCAUACAAGGAAU   1647 Target Full Sequence	2.5	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646584.2	ncRNA:24   CAG----UGAGUCACCGUGUGUUCCUUA   1   |||----|*||*|||||||||=|||||| targets:797   GUCCAGGAGUCCGUGGCACACGAGGAAU   824 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626190 (LOC103626190), mRNA	NA	coding protein	psRNATarget
EU975854.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCCUUA   1   ***=**|||||||||||||||=|| targets:709   UGGGGCCAGUGGCACACAAGGGAU   732 Target Full Sequence	2.5	Zea mays clone 503152 chaperone protein dnaJ mRNA, complete cds	NA	coding protein	psRNATarget
BT085283.1	ncRNA:24   CAGUGAGUCACCGUGUGUUCCUUA   1   ***=**|||||||||||||||=|| targets:962   UGGGGCCAGUGGCACACAAGGGAU   985 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0360M07 mRNA, complete cds	NA	coding protein	psRNATarget