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BaseInfo

ncRNA ID	novel_zma_miR5897
Species	Zea mays
Class	miRNA
Genome position	Chr2:224437917-224438024 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343;SRR2647388;SRR2647389
Length	24
Mature sequence(if miRNA)	85 - GUUUUGUGCUAAUCCAUAGGGAUU - 108
Stem-loop(if miRNA)	--    U  G    -U              A      AAAACCCUACAAAUCAA   GUUU GU CUAA  CCAUAGGGAUUGAG GGGAUU                 A   |||| || ||||  |||||||||||||| ||||||                 A   CAGA UA GAUU  GGUAUCCCUAACUC CUCUAA                 U AG    C  G    UU              C      CCUUCUCUAACCUCUCC
Stem-loop sequence	GUUUUGUGCUAAUCCAUAGGGAUUGAGAGGGAUUAAAACCCUACAAAUCAAAAUCCUCUCCAAUCUCUUCCAAUCUCCCUCAAUCCCUAUGGUUUUAGGAUCAGACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975951.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |||||=|||||||||||||||||| targets:119   AAUCCUUAUGGAUUAGCACAAAAC   142 Target Full Sequence	1.0	Zea mays clone 506398 mRNA sequence	NA	coding protein	psRNATarget
JB167799.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   ||||||||||||||=||||||||| targets:85   AAUCCCUAUGGAUUGGCACAAAAC   108 Target Full Sequence	1.5	Sequence 5463 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239468.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   ||||||||||||||=||||||||| targets:85   AAUCCCUAUGGAUUGGCACAAAAC   108 Target Full Sequence	1.5	Sequence 5463 from Patent EP2985353	NA	coding protein	psRNATarget
HI407338.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   ||||||||||||||=||||||||| targets:85   AAUCCCUAUGGAUUGGCACAAAAC   108 Target Full Sequence	1.5	Sequence 5463 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001154990.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |=||||||||||||||=||||||| targets:1254   AGUCCCUAUGGAUUAGUACAAAAC   1277 Target Full Sequence	1.5	Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA	NA	coding protein	psRNATarget
EU959460.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |=||||||||||||||=||||||| targets:1254   AGUCCCUAUGGAUUAGUACAAAAC   1277 Target Full Sequence	1.5	Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |||||||||||||*|||||||||| targets:2615   AAUCCCUAUGGAUGAGCACAAAAC   2638 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
XM_008653299.2	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |||||||||||||*|||||||||| targets:832   AAUCCCUAUGGAUCAGCACAAAAC   855 Target Full Sequence	1.5	PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971368.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |||||||||||||*|||||||||| targets:800   AAUCCCUAUGGAUCAGCACAAAAC   823 Target Full Sequence	1.5	Zea mays clone 363071 mitochondrial import inner membrane translocase subunit tim22 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001158128.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   |||||||||||||*|||||||||| targets:800   AAUCCCUAUGGAUCAGCACAAAAC   823 Target Full Sequence	1.5	Zea mays mitochondrial import inner membrane translocase subunit tim22 (LOC100285234), mRNA	NA	coding protein	psRNATarget
EU957826.1	ncRNA:24   UUAGGGAUACCUAAUCGUGUUUUG   1   ||||=||||*|||||||=|||||| targets:1116   AAUCUCUAUAGAUUAGCGCAAAAC   1139 Target Full Sequence	2.5	Zea mays clone 1624737 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget