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BaseInfo

ncRNA ID	novel_zma_miR5896
Species	Zea mays
Class	miRNA
Genome position	Chr2:240256447-240256574 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - GGCUUGUUCGCUUUGAAGUGGAUU - 24
Stem-loop(if miRNA)	--        C      A             A     G                         A   GGCUUGUU GCUUUG AGUGGAUUGAGGG GAUUG AGGGGAUUAAAUCCCCUCCUAUACA A   |||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||   CCGAACAA CGAAAU UCACCUAACUCCC CUAAC UCCCCUAAUUUAGGGGAGGAUAUGU U UC        A      C             C     A                         U
Stem-loop sequence	GGCUUGUUCGCUUUGAAGUGGAUUGAGGGAGAUUGGAGGGGAUUAAAUCCCCUCCUAUACAAAUUUGUAUAGGAGGGGAUUUAAUCCCCUACAAUCCCCCUCAAUCCACUCUAAAGCAAACAAGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054119.1	ncRNA:24   UUAGGUGAAGUUUCGCUUGUUCGG   1   =|||||||||*||*|||||||||| targets:461   GAUCCACUUCUAACCGAACAAGCC   484 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT067853.1	ncRNA:24   UUAGGUGAAGUUUCGCUUGUUCGG   1   *|||||||*||||*|||||||||| targets:2212   CAUCCACUCCAAAACGAACAAGCC   2235 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172L19 mRNA, complete cds	NA	coding protein	psRNATarget
EU968162.1	ncRNA:24   UUAGGUGAAGUUUCGCUUGUUCGG   1   ||*||*|||||||*|||||||||| targets:248   AAACCCCUUCAAACCGAACAAGCC   271 Target Full Sequence	2.5	Zea mays clone 315798 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   UUAGGUGAAGUUUCGCUUGUUCGG   1   ||*||*|||||||*|||||||||| targets:209   AAACCCCUUCAAACCGAACAAGCC   232 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget