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BaseInfo

ncRNA ID	novel_zma_miR5888
Species	Zea mays
Class	miRNA
Genome position	Chr2:152741145-152741296 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR1583942
Length	21
Mature sequence(if miRNA)	1 - CAUUUUAAAUCUGGGACAUCC - 21
Stem-loop(if miRNA)	--                 A  C    C     C     C    G       GAUU       ------------      A   CAUUUUAAAUCUGGGAC UC AUCU ACAUC AGCGG AGCA UUAAUUU    AAGAACC            CCUCCC C   ||||||||||||||||| || |||| ||||| ||||| |||| |||||||    |||||||            |||||| C   GUAAAAUUUAGAUCUUG AG UAGG UGUAG UUGUC UCGU GGUUGAA    UUCUUGG            GGAGGG A GU                 C  U    U     U     U    -       AUAU       AAUAAAGUGGAA      A
Stem-loop sequence	CAUUUUAAAUCUGGGACAUCCAUCUCACAUCCAGCGGCAGCAGUUAAUUUGAUUAAGAACCCCUCCCACCAAGGGAGGAAGGUGAAAUAAGGUUCUUUAUAAAGUUGGUGCUUCUGUUUGAUGUUGGAUUGACGUUCUAGAUUUAAAAUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661794.2	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   ||||||==||||||||||||| targets:1051   GGAUGUUUCAGAUUUAAAAUG   1071 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661793.2	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   ||||||==||||||||||||| targets:1042   GGAUGUUUCAGAUUUAAAAUG   1062 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537973.1	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   ||||||=|||||||||||||* targets:3   GGAUGUUCCAGAUUUAAAAUA   23 Target Full Sequence	2.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM22-4-like (LOC109939669), mRNA	NA	coding protein	psRNATarget
XM_008646380.2	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   |*||||||=|||||||||||| targets:809   GAAUGUCCUAGAUUUAAAAUG   829 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase UPL7 (LOC103625986), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645476.2	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   |*|||**|||||||||||||| targets:898   GAAUGCACCAGAUUUAAAAUG   918 Target Full Sequence	2.0	PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163889.1	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   ||||***|||||||||||||| targets:134   GGAUACACCAGAUUUAAAAUG   154 Target Full Sequence	3.0	Sequence 1553 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235558.1	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   ||||***|||||||||||||| targets:134   GGAUACACCAGAUUUAAAAUG   154 Target Full Sequence	3.0	Sequence 1553 from Patent EP2985353	NA	coding protein	psRNATarget
HI403428.1	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   ||||***|||||||||||||| targets:134   GGAUACACCAGAUUUAAAAUG   154 Target Full Sequence	3.0	Sequence 1553 from Patent EP2074227	NA	coding protein	psRNATarget
EU957184.1	ncRNA:21   CCUACAGGGUCUAAAUUUUAC   1   *|||||**||||||||||||* targets:2176   AGAUGUAACAGAUUUAAAAUA   2196 Target Full Sequence	3.0	Zea mays clone 1585268 cytochrome c1, heme protein mRNA, complete cds	NA	coding protein	psRNATarget