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BaseInfo

ncRNA ID novel_zma_miR5887
Species Zea mays
Class miRNA
Genome position Chr1:124750886-124750986 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - ACGACUGUCGCUAUAAAUAGAGAA - 24
Stem-loop(if miRNA) --    -CU       UA           CUC U   A        CG  A  G
  ACGA   GUCGCUA  AAUAGAGAAUU   G CGA CUGUUAGU  GU AU U
  ||||   |||||||  |||||||||||   | ||| ||||||||  || ||
  UGCU   UAGCGAU  UUAUUUCUUAA   C GCU GACGAUCA  CA UG G
AC    AAU       --           --U -   -        AA  C  A
Stem-loop sequence ACGACUGUCGCUAUAAAUAGAGAAUUCUCGUCGAACUGUUAGUCGGUAAUGUGAGUCACAAACUAGCAGUCGCUAAUUCUUUAUUUAGCGAUUAAUCGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008655229.2
ncRNA:24   AAGA------GAUAAAUAUCGCUGUCAGCA   1
  *|||------|||||||||||*||||||||
targets:294   AUCUAUCCGCCUAUUUAUAGCCACAGUCGU   323

1.5 PREDICTED: Zea mays flowering-promoting factor 1-like protein 5 (LOC103633548), mRNA NA coding protein psRNATarget