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BaseInfo

ncRNA ID	novel_zma_miR5886
Species	Zea mays
Class	miRNA
Genome position	Chr1:8595673-8595846 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647389
Length	22
Mature sequence(if miRNA)	1 - GUUGAUUCCACUAAAAUUGAUG - 22
Stem-loop(if miRNA)	--   G           A    U UU      U            A    ---    AUAG     C   AA          -----    A   GUU AUUCCACUAAA UUGA G  AUGAAC UAUGAUGCACCA CUCA   UGAA    AGUGA UCC  AAACCAAACA     UACA A   ||| ||||||||||| |||| |  |||||| |||||||||||| ||||   ||||    ||||| |||  ||||||||||     |||| A   CAG UAAGGUGGUUU AACU C  UACUUG AUACUACGUGGU GAGU   ACUU    UCACU AGG  UUUGGUUUGU     AUGU A UU   -           A    - CU      U            G    UAA    -ACA     A   AA          AGGAG    A
Stem-loop sequence	GUUGAUUCCACUAAAAUUGAUGUUAUGAACUUAUGAUGCACCAACUCAUGAAAUAGAGUGACUCCAAAAACCAAACAUACAAAAAAUGUAGAGGAUGUUUGGUUUAAGGAAUCACUACAUUCAAAUUGAGGUGGUGCAUCAUAUGUUCAUUCCUCAAAUUUGGUGGAAUGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT043079.1	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   ||||||||||=||||||||||| targets:1621   CAUCAAUUUUGGUGGAAUCAAC   1642 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0090P01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148811.2	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   ||||||||||=||||||||||| targets:1621   CAUCAAUUUUGGUGGAAUCAAC   1642 Target Full Sequence	1.5	Zea mays uncharacterized LOC100274452 (LOC100274452), mRNA	NA	coding protein	psRNATarget
BT085306.2	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   ||||||||||=||||||||||| targets:804   CAUCAAUUUUGGUGGAAUCAAC   825 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0370B19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670082.2	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   |||*|||||||||||||||||| targets:2786   CAUAAAUUUUAGUGGAAUCAAC   2807 Target Full Sequence	1.0	PREDICTED: Zea mays Putative leucine-rich repeat receptor-like serine/threonine-protein kinase (LOC100382014), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670083.2	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   |||*|||||||||||||||||| targets:2762   CAUAAAUUUUAGUGGAAUCAAC   2783 Target Full Sequence	1.0	PREDICTED: Zea mays Putative leucine-rich repeat receptor-like serine/threonine-protein kinase (LOC100382014), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666249.2	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   |||*||||||=||||||||||| targets:111   CAUAAAUUUUGGUGGAAUCAAC   132 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger protein ZAT5 (LOC103643080), mRNA	NA	coding protein	psRNATarget
NM_001155307.1	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   ****|||*|||||||||||||| targets:1054   GCAAAAUCUUAGUGGAAUCAAC   1075 Target Full Sequence	2.0	Zea mays solute carrier family 2, facilitated glucose transporter member 8 (LOC100282396), mRNA	NA	coding protein	psRNATarget
EU960756.1	ncRNA:22   GUAGUUAAAAUCACCUUAGUUG   1   ****|||*|||||||||||||| targets:1054   GCAAAAUCUUAGUGGAAUCAAC   1075 Target Full Sequence	2.0	Zea mays clone 228330 solute carrier family 2, facilitated glucose transporter member 8 mRNA, complete cds	NA	coding protein	psRNATarget