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BaseInfo

ncRNA ID	novel_zma_miR5884
Species	Zea mays
Class	miRNA
Genome position	Chr1:62093048-62093129 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343;SRR2647385;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - CCCUAACUGACUCUGCGCACGCGU - 24
Stem-loop(if miRNA)	--     --    -  -      CAC  G     C       CC   CCCUA  ACUG AC UCUGCG   GC UGGAC GUCUGCG  A   |||||  |||| || ||||||   || ||||| |||||||  C   GGGAU  UGGC UG AGACGC   CG GCCUG CAGGCGC  C CU     UC    C  C      ---  G     U       CA
Stem-loop sequence	CCCUAACUGACUCUGCGCACGCGUGGACCGUCUGCGCCACCACCGCGGACUGUCCGGGCCGCAGACGUCCGGUCUUAGGGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088349.1	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   =||||||||||||||||||||||| targets:793   GCGCGUGCGCAGAGUCAGUUAGGG   816 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   =||||||||||||||||||||||| targets:793   GCGCGUGCGCAGAGUCAGUUAGGG   816 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001176396.2	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   =||||||||||||||||||||||* targets:1094   GCGCGUGCGCAGAGUCAGUUAGGA   1117 Target Full Sequence	1.0	Zea mays Amidohydrolase family (LOC100383761), mRNA	NA	coding protein	psRNATarget
BT068223.1	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   =||||||||||||||||||||||* targets:1094   GCGCGUGCGCAGAGUCAGUUAGGA   1117 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0087M02 mRNA, complete cds	NA	coding protein	psRNATarget
EU964936.1	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   =||||*|||||||||||||||||| targets:1212   GCGCGCGCGCAGAGUCAGUUAGGG   1235 Target Full Sequence	1.0	Zea mays clone 282666 ethylene responsive protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156399.1	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   =||||*|||||||||||||||||| targets:1212   GCGCGCGCGCAGAGUCAGUUAGGG   1235 Target Full Sequence	1.0	Zea mays ethylene responsive protein (LOC100283499), mRNA	NA	coding protein	psRNATarget
BT084942.2	ncRNA:24   UGCGCACGCGUCUCAGUCAAUCCC   1   **||*|||||||||||||||||** targets:267   CAGCUUGCGCAGAGUCAGUUAGAU   290 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0212A09 mRNA, complete cds	NA	coding protein	psRNATarget