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BaseInfo

ncRNA ID novel_zma_miR5878
Species Zea mays
Class miRNA
Genome position Chr1:40552478-40552540 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647343
Length 24
Mature sequence(if miRNA) 1 - GAUUUUAAACCUAAUAAAGGGCUA - 24
Stem-loop(if miRNA) --    AAA    A          -UU    G
  GUCC   AUUG GUUUAAAAUU   UUUA G
  ||||   |||| ||||||||||   ||||
  CGGG   UAAU CAAAUUUUAG   AAAU U
AU    AAA    C          UGC    C
Stem-loop sequence GUCCAAAAUUGAGUUUAAAAUUUUUUUAGGUCUAAACGUGAUUUUAAACCUAAUAAAGGGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061472.1
ncRNA:24   AUCGGGAAAUAAUCCAAAUUUUAG   1
  ||||||||||||||||||||||||
targets:1264   UAGCCCUUUAUUAGGUUUAAAAUC   1287

0.0 Zea mays full-length cDNA clone ZM_BFb0150I01 mRNA, complete cds NA coding protein psRNATarget