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BaseInfo

ncRNA ID novel_zma_miR5876
Species Zea mays
Class miRNA
Genome position Chr1:43328220-43328354 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - CGGUCCGCGACCUGAUGCAGGAGC - 24
Stem-loop(if miRNA) --  U   -      -       G   CGC   -A    G -     G       A      GC   -   G
  UC CUG GUCAGG CGCGGAC GUC   GGC  CAGG C CGGAC GUCCGCG CCUGGC  GAG GCG C
  || ||| |||||| ||||||| |||   |||  |||| | ||||| ||||||| ||||||  ||| |||
  AG GAC UAGUCC GCGCCUG CAG   CCG  GUCC G GCCUG CAGGCGC GGACUG  CUC CGU G
CG  -   G      A       G   --A   GG    G C     G       -      GU   U   G
Stem-loop sequence UCUCUGGUCAGGCGCGGACGGUCCGCGGCACAGGGCCGGACGGUCCGCGACCUGGCGCGAGGCGGCGGUGCUCUCUGGUCAGGCGCGGACGGUCCGCGGCCUGGGGCCAGACGGUCCGCGACCUGAUGCAGGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ064356.1
ncRNA:24   CGAGGACGUAGUCCAGCGCCUGGC   1
  *|*=||||*|||*|||||||||||
targets:345   CCGUCUGCCUCAUGUCGCGGACCG   368

2.5 TSA: Zea mays contig65480, mRNA sequence NA coding protein psRNATarget