ncRNA ID | novel_zma_miR5876 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:43328220-43328354 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CGGUCCGCGACCUGAUGCAGGAGC - 24 |
Stem-loop(if miRNA) |
--  U   -      -       G   CGC   -A    G -     G       A      GC   -   G   UC CUG GUCAGG CGCGGAC GUC   GGC  CAGG C CGGAC GUCCGCG CCUGGC  GAG GCG C   || ||| |||||| ||||||| |||   |||  |||| | ||||| ||||||| ||||||  ||| |||   AG GAC UAGUCC GCGCCUG CAG   CCG  GUCC G GCCUG CAGGCGC GGACUG  CUC CGU G CG  -   G      A       G   --A   GG    G C     G       -      GU   U   G |
Stem-loop sequence | UCUCUGGUCAGGCGCGGACGGUCCGCGGCACAGGGCCGGACGGUCCGCGACCUGGCGCGAGGCGGCGGUGCUCUCUGGUCAGGCGCGGACGGUCCGCGGCCUGGGGCCAGACGGUCCGCGACCUGAUGCAGGAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ064356.1 |
|
2.5 | TSA: Zea mays contig65480, mRNA sequence | NA | coding protein | psRNATarget |