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BaseInfo

ncRNA ID	novel_zma_miR5872
Species	Zea mays
Class	miRNA
Genome position	Chr1:129853235-129853292 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647391
Length	24
Mature sequence(if miRNA)	1 - CUCUAGGAAGUUAAGUAACUUUCU - 24
Stem-loop(if miRNA)	--       AG             UACAU   GAAGUUA  UAACUUCCUAGAG     G   |||||||  |||||||||||||   UUUCAAU  AUUGAAGGAUCUC     U UC       GA             CAACC
Stem-loop sequence	GAAGUUAAGUAACUUCCUAGAGUACAUGUCCAACCUCUAGGAAGUUAAGUAACUUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949881.1	ncRNA:24   UCUUUCAAUGAAUUGAAGGAUCUC   1   ||=||||||||||||||||||||| targets:945   AGGAAGUUACUUAACUUCCUAGAG   968 Target Full Sequence	0.0	Zea mays clone 450754 mRNA sequence	NA	coding protein	psRNATarget
EU949881.1	ncRNA:24   UCUUUCAAUGAAUUGAAGGAUCUC   1   ||*||||||||||||||||||||| targets:905   AGCAAGUUACUUAACUUCCUAGAG   928 Target Full Sequence	0.0	Zea mays clone 450754 mRNA sequence	NA	coding protein	psRNATarget
XM_020553435.1	ncRNA:24   UCUUUCAAU-GAAUUGAAGGAUCUC   1   *|=||||||-||||||||||||||| targets:4473   CGGAAGUUAGCUUAACUUCCUAGAG   4497 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682719.2	ncRNA:24   UCUUUCAAU-GAAUUGAAGGAUCUC   1   *|=||||||-||||||||||||||| targets:1713   CGGAAGUUAGCUUAACUUCCUAGAG   1737 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT062217.1	ncRNA:24   UCUUUCAAU-GAAUUGAAGGAUCUC   1   *|=||||||-||||||||||||||| targets:1583   CGGAAGUUAGCUUAACUUCCUAGAG   1607 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0228H22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553436.1	ncRNA:24   UCUUUCAAU-GAAUUGAAGGAUCUC   1   *|=||||||-||||||||||||||| targets:1713   CGGAAGUUAGCUUAACUUCCUAGAG   1737 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100286139 (si606063d04), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT069034.2	ncRNA:24   UCUUUCAAU-GAAUUGAAGGAUCUC   1   **|||||||-||||||||||||||| targets:202   CAAAAGUUAGCUUAACUUCCUAGAG   226 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0146G18 mRNA, complete cds	NA	coding protein	psRNATarget