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BaseInfo

ncRNA ID	novel_zma_miR5871
Species	Zea mays
Class	miRNA
Genome position	Chr1:43317243-43317383 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	19
Mature sequence(if miRNA)	123 - CCUGAACUCCUCAUCGCCA - 141
Stem-loop(if miRNA)	--    -   -   GCG  U    UCCCAACCC     CC     A  GACAAAACACCACCACCAACU       AUAU  C   U   GCGA GAG AGU   AG GUCU         UGGAC  ACCGA GC                     CCGUAGC    GC GAC G   |||| ||| |||   || ||||         |||||  ||||| ||                     |||||||    || |||   CGCU CUC UCA   UC CAGA         ACCUG  UGGUU CG                     GGCAUCG    CG CUG A AC    A   C   -AG  -    --CUCUAUA     -U     C  ---------------------       ----  -   U
Stem-loop sequence	GCGAGAGAGUGCGAGUGUCUUCCCAACCCUGGACCCACCGAAGCGACAAAACACCACCACCAACUCCGUAGCAUAUGCCGACUGAUGUCGCGCUACGGGCCUUGGUUGUCCAAUAUCUCAGACCUGAACUCCUCAUCGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY106940.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:264   CGGCGAUGAGGAGUGCAGG   282 Target Full Sequence	2.5	Zea mays PCO083964 mRNA sequence	NA	coding protein	psRNATarget
EU961157.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *||||||*||||||||||| targets:1193   CGGCGAUCAGGAGUUCAGG   1211 Target Full Sequence	2.5	Zea mays clone 232989 leucoanthocyanidin reductase mRNA, complete cds	NA	coding protein	psRNATarget
BT041473.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1314   CGGCGAUGAGGAGUGCAGG   1332 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K16 mRNA, complete cds	NA	coding protein	psRNATarget
BT067566.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1321   CGGCGAUGAGGAGUGCAGG   1339 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0091O22 mRNA, complete cds	NA	coding protein	psRNATarget
BT064336.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1326   CGGCGAUGAGGAGUGCAGG   1344 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0160J04 mRNA, complete cds	NA	coding protein	psRNATarget
BT040130.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1349   CGGCGAUGAGGAGUGCAGG   1367 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066O19 mRNA, complete cds	NA	coding protein	psRNATarget
BT016778.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1314   CGGCGAUGAGGAGUGCAGG   1332 Target Full Sequence	2.5	Zea mays clone Contig611 mRNA sequence	NA	coding protein	psRNATarget
XM_008678858.2	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1359   CGGCGAUGAGGAGUGCAGG   1377 Target Full Sequence	2.5	PREDICTED: Zea mays putative regulator of chromosome condensation (RCC1) family protein (LOC100279306), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU960451.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1351   CGGCGAUGAGGAGUGCAGG   1369 Target Full Sequence	2.5	Zea mays clone 224990 HECT domain and RCC1-like domain-containing protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678859.2	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:1545   CGGCGAUGAGGAGUGCAGG   1563 Target Full Sequence	2.5	PREDICTED: Zea mays putative regulator of chromosome condensation (RCC1) family protein (LOC100279306), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054005.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:2107   CGGCGAUGAGGAGUGCAGG   2125 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0118O21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152327.1	ncRNA:19   ACCGCUACUCCUCAAGUCC   1   *|||||||||||||*|||| targets:2107   CGGCGAUGAGGAGUGCAGG   2125 Target Full Sequence	2.5	Zea mays putative regulator of chromosome condensation (RCC1) family protein (LOC100279306), mRNA	NA	coding protein	psRNATarget