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BaseInfo

ncRNA ID	novel_zma_miR5864
Species	Zea mays
Class	miRNA
Genome position	Chr1:228913601-228913655 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - UUUCUCUUGGGAAAAUGAAAAUCC - 24
Stem-loop(if miRNA)	---A    U         U      AUG     UUUC AUUUUCUCA GGGAAA   A     |||| ||||||||| ||||||   A     AAAG UAAAAGGGU CUCUUU   C CCUA    -         U      AGU
Stem-loop sequence	AUUUCUAUUUUCUCAUGGGAAAAUGAACUGAUUUCUCUUGGGAAAAUGAAAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646834.2	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||=|||||||| targets:4135   GGAUUUUCAUUUUCCUAAGAGAAA   4158 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||||||=|||| targets:1580   GGAUUUUCAUUUUCCCAAGGGAAA   1603 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||||||=|||| targets:1494   GGAUUUUCAUUUUCCCAAGGGAAA   1517 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||||||=|||| targets:1451   GGAUUUUCAUUUUCCCAAGGGAAA   1474 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||||||=|||| targets:1450   GGAUUUUCAUUUUCCCAAGGGAAA   1473 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||||||=|||| targets:1407   GGAUUUUCAUUUUCCCAAGGGAAA   1430 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU950786.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||||||=|||| targets:317   GGAUUUUCAUUUUCCCAAGGGAAA   340 Target Full Sequence	1.5	Zea mays clone 622889 mRNA sequence	NA	coding protein	psRNATarget
EZ517194.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||||||||||=|||||||| targets:338   GGAUUUUCAUUUUCCUAAGAGAAA   361 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL602Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
BT063756.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   ||||||||=||||||||||=|||| targets:1618   GGAUUUUCGUUUUCCCAAGGGAAA   1641 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0104A15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956246.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||=|||||=|||||||||| targets:768   GGAUUUUUAUUUUUCCAAGAGAAA   791 Target Full Sequence	2.5	Zea mays clone 1559557 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154209.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   |||||||=|||||=|||||||||| targets:768   GGAUUUUUAUUUUUCCAAGAGAAA   791 Target Full Sequence	2.5	Zea mays phospholipid hydroperoxide glutathione peroxidase (LOC100281291), mRNA	NA	coding protein	psRNATarget
NM_001351109.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   ||*||||||||||||||||||||* targets:1516   GGUUUUUCAUUUUCCCAAGAGAAU   1539 Target Full Sequence	1.0	Zea mays protein PELOTA 1 (LOC103645815), mRNA	NA	coding protein	psRNATarget
XM_020548086.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   ||*||||||||||||||||||||* targets:1260   GGUUUUUCAUUUUCCCAAGAGAAU   1283 Target Full Sequence	1.0	PREDICTED: Zea mays protein PELOTA 1 (LOC103645815), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   *|||||*||||||||||||=|||| targets:773   AGAUUUCCAUUUUCCCAAGGGAAA   796 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   ||||||*||||||*|||||||||| targets:391   GGAUUUCCAUUUUGCCAAGAGAAA   414 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ051588.1	ncRNA:24   CCUAAAAGUAAAAGGGUUCUCUUU   1   **||||||||||||||||||*||| targets:703   AAAUUUUCAUUUUCCCAAGAAAAA   726 Target Full Sequence	1.5	TSA: Zea mays contig52708, mRNA sequence	NA	coding protein	psRNATarget