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BaseInfo

ncRNA ID novel_zma_miR5859
Species Zea mays
Class miRNA
Genome position Chr1:296889152-296889203 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647385;SRR2647386;SRR2647389;SRR2647390;SRR2647391;SRR2647467;SRR1583943
Length 24
Mature sequence(if miRNA) 29 - GACUAGGCGGGGAUUUAAACCCCU - 52
Stem-loop(if miRNA) --   A          U    C   A
  GGG UUAAAUCCUC CCUA UCA A
  ||| |||||||||| |||| |||
  CCC AAUUUAGGGG GGAU AGU A
UC   A          C    C   A
Stem-loop sequence GGGAUUAAAUCCUCUCCUACUCAAAAAUGACUAGGCGGGGAUUUAAACCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ095217.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||||||||||||||||||||||||
targets:73   AGGGGUUUAAAUCCCCGCCUAGUC   96

0.0 TSA: Zea mays contig30870, mRNA sequence NA coding protein psRNATarget
XM_020542872.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  |||||||||||||||||=||||||
targets:1304   AGGGGUUUAAAUCCCCGUCUAGUC   1327

1.5 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020540164.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  |||||||||||||||||=||||||
targets:1556   AGGGGUUUAAAUCCCCGUCUAGUC   1579

1.5 PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA NA coding protein psRNATarget
HI403028.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||*||*||*|||||||||||||||
targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59

2.0 Sequence 1153 from Patent EP2074227 NA coding protein psRNATarget
LQ235158.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||*||*||*|||||||||||||||
targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59

2.0 Sequence 1153 from Patent EP2985353 NA coding protein psRNATarget
JB163489.1
ncRNA:24   UCCCCAAAUUUAGGGGCGGAUCAG   1
  ||*||*||*|||||||||||||||
targets:36   AGAGGAUUUAAUCCCCGCCUAGUC   59

2.0 Sequence 1153 from Patent EP2559767 NA coding protein psRNATarget
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