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BaseInfo

ncRNA ID	novel_zma_miR5857
Species	Zea mays
Class	miRNA
Genome position	Chr10:132285847-132285993 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - AUCCCUUUCUAUUCAAUUUUGACU - 24
Stem-loop(if miRNA)	--        A    U   AA                   -    U    ------AAAUU  GAUCCAGACGAACA   UCAAAAUU AAUA AAG  GAUUUAAUCCUCUUCAAUC CCUC CGUU           UC              A   |||||||| |||| |||  ||||||||||||||||||| |||| ||||           ||              G   AGUUUUAA UUAU UUU  CUAAAUUAGGGGGAGUUAG GGAG GCGA           GC              U UC        C    C   CC                   A    -    AACCUACUUUA  UUGUACGGGAUUCC
Stem-loop sequence	UCAAAAUUAAAUAUAAGAAGAUUUAAUCCUCUUCAAUCCCUCUCGUUAAAUUUCGAUCCAGACGAACAAGUCCUUAGGGCAUGUUCGAUUUCAUCCAAAGCGGAGGAGAUUGAGGGGGAUUAAAUCCCUUUCUAUUCAAUUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069264.1	ncRNA:24   UCAGUUUUAACUUAUCUUUCCCUA   1   |*||||||||||||||*||||||| targets:583   AUUCAAAAUUGAAUAGCAAGGGAU   606 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0018B12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UCAGUUUUAACUUAU-CUUUCCCUA   1   |*|=|||||||||||-||||||||| targets:3508   AUUUAAAAUUGAAUAAGAAAGGGAU   3532 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UCAGUUUUAACUUAU-CUUUCCCUA   1   |*|=|||||||||||-||||||||| targets:3473   AUUUAAAAUUGAAUAAGAAAGGGAU   3497 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EU944906.1	ncRNA:24   UCAGUUUUAACUUAUCUUUCCCUA   1   |||=||||||*|||||||||*||| targets:312   AGUUAAAAUUAAAUAGAAAGAGAU   335 Target Full Sequence	2.5	Zea mays clone 235068 mRNA sequence	NA	coding protein	psRNATarget
XM_020550623.1	ncRNA:24   UC--AGUUUUAACUUAUCUUUCCCUA   1   ||--|==||||||||||*|||||||| targets:15   AGGAUUGAAAUUGAAUAAAAAGGGAU   40 Target Full Sequence	1.5	PREDICTED: Zea mays clathrin heavy chain 1 (LOC103652644), mRNA	NA	coding protein	psRNATarget