Search result

BaseInfo

ncRNA ID	novel_zma_miR5853
Species	Zea mays
Class	miRNA
Genome position	Chr6:143202261-143202412 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	129 - AACACUCGGCAAAGGGCUCUUUGC - 152
Stem-loop(if miRNA)	--                    CCA  CAAAAAACUCUCGGUAAAAGAGAACACUCGGCGAAGAAGCUCUUUGCCG   AAAGAGCUCUUUGCCGAGUG   CG                                                 A   ||||||||||||||||||||   ||   UUUCUCGGGAAACGGCUCAC   UU                                                 G CG                    AAU  UUUUCUGUGAGCCGUUUCUUUGAGAAACGGCUCACAGUUUUUAUUUUGU
Stem-loop sequence	AAAGAGCUCUUUGCCGAGUGCCACGCAAAAAACUCUCGGUAAAAGAGAACACUCGGCGAAGAAGCUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGAGUUUCUUUGCCGAGUGUCUUUUUUUAACACUCGGCAAAGGGCUCUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238823.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGUUUCU-CGGGAAACGGCUCACAA   1   |||||||-||=|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CGUUUCU-CGGGAAACGGCUCACAA   1   |||||||-||=|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||| targets:100   GCAAAGAGCUCUUUGCCGAGUGUU   123 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUC   83 Target Full Sequence	2.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGUUUCU-CGGGAAACGGCUCACAA   1   |||||||-||=|||||||||||||| targets:19   GCAAAGAAGCUCUUUGCCGAGUGUU   43 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||| targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||||=|||||||||||||| targets:1980   GCAAAGAGCUCUUUGCCGAGUGUU   2003 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   ||||||=|==|||||||||||||| targets:585   GCAAAGGGUUCUUUGCCGAGUGUU   608 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
HI406967.1	ncRNA:24   CGUUUCUCGG--GAAACGGCUCACAA   1   ||*=||||||--|||||||||||||| targets:12   GCCGAGAGCCAUCUUUGCCGAGUGUU   37 Target Full Sequence	2.5	Sequence 5092 from Patent EP2074227	NA	coding protein	psRNATarget
JB167428.1	ncRNA:24   CGUUUCUCGG--GAAACGGCUCACAA   1   ||*=||||||--|||||||||||||| targets:12   GCCGAGAGCCAUCUUUGCCGAGUGUU   37 Target Full Sequence	2.5	Sequence 5092 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239097.1	ncRNA:24   CGUUUCUCGG--GAAACGGCUCACAA   1   ||*=||||||--|||||||||||||| targets:12   GCCGAGAGCCAUCUUUGCCGAGUGUU   37 Target Full Sequence	2.5	Sequence 5092 from Patent EP2985353	NA	coding protein	psRNATarget
HI407018.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||**||||||||||||||* targets:50   GCAAAGAAGCCUUUGCCGAGUGUA   73 Target Full Sequence	3.0	Sequence 5143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239148.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||**||||||||||||||* targets:50   GCAAAGAAGCCUUUGCCGAGUGUA   73 Target Full Sequence	3.0	Sequence 5143 from Patent EP2985353	NA	coding protein	psRNATarget
JB167479.1	ncRNA:24   CGUUUCUCGGGAAACGGCUCACAA   1   |||||||**||||||||||||||* targets:50   GCAAAGAAGCCUUUGCCGAGUGUA   73 Target Full Sequence	3.0	Sequence 5143 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:24   CGUUUCUCGG--GAAACGGCUCACAA   1   *==**|||||--|||||||||||||| targets:188   UUGUCGAGCCUUCUUUGCCGAGUGUU   213 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget