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BaseInfo

ncRNA ID	novel_zma_miR5850
Species	Zea mays
Class	miRNA
Genome position	Chr9:31124908-31125065 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	23
Mature sequence(if miRNA)	136 - AAAUAAGUUGUUGCCGAUGUACA - 158
Stem-loop(if miRNA)	--AA      U    C         G UC      ----CU     CA        - ---A        ---------              AUAAGU GUUG CGAUGUACA U  GCCGAG      CUCUU  CUGAGUGU C    CACUCGGC         AAAGCUUUCA     |||||| |||| ||||||||| |  ||||||      |||||  |||||||| |    ||||||||         |||||||||C     UAUUCG UAAC GUUAUAUGU A  UGGCUU      GAGAA  GGCUUAUA G    GUGAGCCG         UUUUGAGAGC UGAC      C    A         G --      UAAUCC     AC        U CUUC        CUUCAGGCC
Stem-loop sequence	AAAUAAGUUGUUGCCGAUGUACAGUUCGCCGAGCUCUCUUCACUGAGUGUCACACUCGGCAAAGCUUUCACCGAGAGUUUUCCGGACUUCGCCGAGUGCUUCGUAUAUUCGGCAAAGAGCCUAAUUUCGGUAGUGUAUAUUGACAAUCGCUUAUCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008655142.2	ncRNA:23   ACAUGUAGCCGUUGUUGAAUAAA   1   ***|||||*||||||||||*||| targets:1917   AAAACAUCCGCAACAACUUCUUU   1939 Target Full Sequence	2.5	PREDICTED: Zea mays SAP domain-containing protein (LOC100502129), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008655140.2	ncRNA:23   ACAUGUAGCCGUUGUUGAAUAAA   1   ***|||||*||||||||||*||| targets:1916   AAAACAUCCGCAACAACUUCUUU   1938 Target Full Sequence	2.5	PREDICTED: Zea mays SAP domain-containing protein (LOC100502129), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541211.1	ncRNA:23   ACAUGUAGCCGUUGUUGAAUAAA   1   ***|||||*||||||||||*||| targets:1744   AAAACAUCCGCAACAACUUCUUU   1766 Target Full Sequence	2.5	PREDICTED: Zea mays SAP domain-containing protein (LOC100502129), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020541210.1	ncRNA:23   ACAUGUAGCCGUUGUUGAAUAAA   1   ***|||||*||||||||||*||| targets:1814   AAAACAUCCGCAACAACUUCUUU   1836 Target Full Sequence	2.5	PREDICTED: Zea mays SAP domain-containing protein (LOC100502129), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541209.1	ncRNA:23   ACAUGUAGCCGUUGUUGAAUAAA   1   ***|||||*||||||||||*||| targets:1916   AAAACAUCCGCAACAACUUCUUU   1938 Target Full Sequence	2.5	PREDICTED: Zea mays SAP domain-containing protein (LOC100502129), transcript variant X1, mRNA	NA	coding protein	psRNATarget