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BaseInfo

ncRNA ID novel_zma_miR5848
Species Zea mays
Class miRNA
Genome position Chr9:92113123-92113209 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR1583942
Length 22
Mature sequence(if miRNA) 1 - UAUCUCUUCUGAUGUUCAUGAG - 22
Stem-loop(if miRNA) --    GU  -     U    GCAAGAUUG  U     -  UCGCA
  CAUG  CG CAGGA GGGA         GC CAUGG GA     G
  ||||  || ||||| ||||         || ||||| ||
  GUAC  GU GUCUU CUCU         CG GUACC CU     C
GA    UU  A     -    --AUAAGGA  U     U  UCUUU
Stem-loop sequence CAUGGUCGCAGGAUGGGAGCAAGAUUGGCUCAUGGGAUCGCAGCUUUCUUCUCCAUGUGCAGGAAUAUCUCUUCUGAUGUUCAUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ055311.1
ncRNA:22   GAGUACUUGUAGUCUUCUCUAU   1
  ||=||||||||||||*|||||=
targets:891   CUUAUGAACAUCAGAUGAGAUG   912

2.5 TSA: Zea mays contig56433, mRNA sequence NA coding protein psRNATarget