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BaseInfo

ncRNA ID novel_zma_miR5844
Species Zea mays
Class miRNA
Genome position Chr9:154241084-154241152 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 22
Mature sequence(if miRNA) 48 - AUAUAAUAUCCUACGUCCGAUG - 69
Stem-loop(if miRNA) AUAUAA    C  C           -   CG  G
      UAUC UA GUCCGAUGGCU GUC  AU A
      |||| || ||||||||||| |||  ||
      AUGG AU CAGGUUGCUGA UAG  UG C
CUUGUA    A  A           A   AU  U
Stem-loop sequence AUAUAAUAUCCUACGUCCGAUGGCUGUCCGAUGACUGUUAGAUAAGUCGUUGGACAUAAGGUAAUGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943314.1
ncRNA:22   GU-AGCCUGCAUCCUAUAAUAUA   1
  ||-|=*||*||||||||||||||
targets:346   CAGUUUGAGGUAGGAUAUUAUAU   368

3.0 Zea mays clone 1596522 mRNA sequence NA coding protein psRNATarget