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BaseInfo

ncRNA ID novel_zma_miR5841
Species Zea mays
Class miRNA
Genome position Chr9:146845361-146845459 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 76 - CCUACGGUUUUAUAUAAAAGCUGU - 99
Stem-loop(if miRNA) --          A               U    UU      U       U
  AGCUUUUAUA AAAACUGUAGGAAGU AUGU  AUUUCC AGAGGUA C
  |||||||||| ||||||||||||||| ||||  |||||| ||||||| A
  UCGAAAAUAU UUUUGGCAUCCUUUA UGUA  UGAAGG UCUCCGU G
UG          A               -    -U      C       U
Stem-loop sequence AGCUUUUAUAAAAAACUGUAGGAAGUUAUGUUUAUUUCCUAGAGGUAUCAGUUGCCUCUCGGAAGUUAUGUAUUUCCUACGGUUUUAUAUAAAAGCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   UGUCGAAAAUAUAUUUUGGCAUCC   1
  ||||||||||||*||||||||||*
targets:1138   ACAGCUUUUAUAAAAAACCGUAGA   1161

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget