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BaseInfo

ncRNA ID	novel_zma_miR5840
Species	Zea mays
Class	miRNA
Genome position	Chr8:111483887-111483949 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - AAGUCUAUCUCAAAUUCAUGGAGU - 24
Stem-loop(if miRNA)	AAGUCUA     AA   AUGGAGUGGAGGAUGA        UCUCA  UUC                G        |||||  |||                A        UUAAG  AUG                A ----UGU     --   AUUAUGUAUUUUAGUA
Stem-loop sequence	AAGUCUAUCUCAAAUUCAUGGAGUGGAGGAUGAGAAAUGAUUUUAUGUAUUAGUAGAAUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068066.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   |||||||||||||||||||||||| targets:611   ACUCCAUGAAUUUGAGAUAGACUU   634 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0037O10 mRNA, complete cds	NA	coding protein	psRNATarget
EU972160.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   |||=|||||||||||||||||||| targets:512   ACUUCAUGAAUUUGAGAUAGACUU   535 Target Full Sequence	0.0	Zea mays clone 376628 mRNA sequence	NA	coding protein	psRNATarget
EU957455.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ||*|=||||||||||||||||||| targets:939   ACCCUAUGAAUUUGAGAUAGACUU   962 Target Full Sequence	0.0	Zea mays clone 1592915 mRNA sequence	NA	coding protein	psRNATarget
BT063476.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ==*|||||||||||||||||=||| targets:1732   GUCCCAUGAAUUUGAGAUAGGCUU   1755 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0067H23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540291.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   |=*|=|||||||||=||||||||| targets:2193   AUCCUAUGAAUUUGGGAUAGACUU   2216 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (pco092239), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ||*||||||||||||||||*|||| targets:70   ACCCCAUGAAUUUGAGAUAUACUU   93 Target Full Sequence	1.5	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651668.2	ncRNA:24   UGAG-----GUACUUAAACUCUAUCUGAA   1   *|||-----|||||||||||||||||=|| targets:2011   UCUCGCCCACAUGAAUUUGAGAUAGAUUU   2039 Target Full Sequence	1.5	PREDICTED: Zea mays GDSL esterase/lipase At4g18970 (LOC103630621), mRNA	NA	coding protein	psRNATarget
XM_020538936.1	ncRNA:24   UGAG-----GUACUUAAACUCUAUCUGAA   1   ||||-----|||*|||||||||||||||| targets:582   ACUCUAUCUCAUAAAUUUGAGAUAGACUU   610 Target Full Sequence	1.0	PREDICTED: Zea mays peptide transporter PTR2 (LOC100281420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU958050.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ||*=||||||||||||||||*||| targets:84   ACCUCAUGAAUUUGAGAUAGUCUU   107 Target Full Sequence	1.5	Zea mays clone 1670548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149779.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ||*=||||||||||||||||*||| targets:84   ACCUCAUGAAUUUGAGAUAGUCUU   107 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275779 (LOC100275779), mRNA	NA	coding protein	psRNATarget
XM_008681355.2	ncRNA:24   UGA------GGUACUUAAACUCUAUCUGAA   1   |||------|=||||||||*|||||||||| targets:2512   ACUGCACCCCUAUGAAUUUAAGAUAGACUU   2541 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654525 (LOC103654525), mRNA	NA	coding protein	psRNATarget
XM_020551574.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ||**=|||||||||||||||*||| targets:768   ACCAUAUGAAUUUGAGAUAGUCUU   791 Target Full Sequence	1.5	PREDICTED: Zea mays DNA binding protein (LOC100283369), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020551573.1	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   ||**=|||||||||||||||*||| targets:457   ACCAUAUGAAUUUGAGAUAGUCUU   480 Target Full Sequence	1.5	PREDICTED: Zea mays DNA binding protein (LOC100283369), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT062740.2	ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1   |=*|=||*|||||||||||*|||| targets:973   AUCCUAUCAAUUUGAGAUAAACUU   996 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0340F04 mRNA, complete cds	NA	coding protein	psRNATarget