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BaseInfo

ncRNA ID novel_zma_miR5840
Species Zea mays
Class miRNA
Genome position Chr8:111483887-111483949 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - AAGUCUAUCUCAAAUUCAUGGAGU - 24
Stem-loop(if miRNA) AAGUCUA     AA   AUGGAGUGGAGGAUGA
       UCUCA  UUC                G
       |||||  |||                A
       UUAAG  AUG                A
----UGU     --   AUUAUGUAUUUUAGUA
Stem-loop sequence AAGUCUAUCUCAAAUUCAUGGAGUGGAGGAUGAGAAAUGAUUUUAUGUAUUAGUAGAAUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT068066.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||||||||||||||||||||||||
targets:611   ACUCCAUGAAUUUGAGAUAGACUU   634

0.0 Zea mays full-length cDNA clone ZM_BFb0037O10 mRNA, complete cds NA coding protein psRNATarget
EU972160.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  |||=||||||||||||||||||||
targets:512   ACUUCAUGAAUUUGAGAUAGACUU   535

0.0 Zea mays clone 376628 mRNA sequence NA coding protein psRNATarget
EU957455.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||*|=|||||||||||||||||||
targets:939   ACCCUAUGAAUUUGAGAUAGACUU   962

0.0 Zea mays clone 1592915 mRNA sequence NA coding protein psRNATarget
BT063476.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ==*|||||||||||||||||=|||
targets:1732   GUCCCAUGAAUUUGAGAUAGGCUU   1755

1.5 Zea mays full-length cDNA clone ZM_BFc0067H23 mRNA, complete cds NA coding protein psRNATarget
XM_020540291.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  |=*|=|||||||||=|||||||||
targets:2193   AUCCUAUGAAUUUGGGAUAGACUU   2216

1.5 PREDICTED: Zea mays hypothetical protein (pco092239), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675165.2
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||*||||||||||||||||*||||
targets:70   ACCCCAUGAAUUUGAGAUAUACUU   93

1.5 PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651668.2
ncRNA:24   UGAG-----GUACUUAAACUCUAUCUGAA   1
  *|||-----|||||||||||||||||=||
targets:2011   UCUCGCCCACAUGAAUUUGAGAUAGAUUU   2039

1.5 PREDICTED: Zea mays GDSL esterase/lipase At4g18970 (LOC103630621), mRNA NA coding protein psRNATarget
XM_020538936.1
ncRNA:24   UGAG-----GUACUUAAACUCUAUCUGAA   1
  ||||-----|||*||||||||||||||||
targets:582   ACUCUAUCUCAUAAAUUUGAGAUAGACUU   610

1.0 PREDICTED: Zea mays peptide transporter PTR2 (LOC100281420), transcript variant X1, mRNA NA coding protein psRNATarget
EU958050.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||*=||||||||||||||||*|||
targets:84   ACCUCAUGAAUUUGAGAUAGUCUU   107

1.5 Zea mays clone 1670548 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149779.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||*=||||||||||||||||*|||
targets:84   ACCUCAUGAAUUUGAGAUAGUCUU   107

1.5 Zea mays uncharacterized LOC100275779 (LOC100275779), mRNA NA coding protein psRNATarget
XM_008681355.2
ncRNA:24   UGA------GGUACUUAAACUCUAUCUGAA   1
  |||------|=||||||||*||||||||||
targets:2512   ACUGCACCCCUAUGAAUUUAAGAUAGACUU   2541

1.5 PREDICTED: Zea mays uncharacterized LOC103654525 (LOC103654525), mRNA NA coding protein psRNATarget
XM_020551574.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||**=|||||||||||||||*|||
targets:768   ACCAUAUGAAUUUGAGAUAGUCUU   791

1.5 PREDICTED: Zea mays DNA binding protein (LOC100283369), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551573.1
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  ||**=|||||||||||||||*|||
targets:457   ACCAUAUGAAUUUGAGAUAGUCUU   480

1.5 PREDICTED: Zea mays DNA binding protein (LOC100283369), transcript variant X2, mRNA NA coding protein psRNATarget
BT062740.2
ncRNA:24   UGAGGUACUUAAACUCUAUCUGAA   1
  |=*|=||*|||||||||||*||||
targets:973   AUCCUAUCAAUUUGAGAUAAACUU   996

2.5 Zea mays full-length cDNA clone ZM_BFb0340F04 mRNA, complete cds NA coding protein psRNATarget