Search result

BaseInfo

ncRNA ID	novel_zma_miR5831
Species	Zea mays
Class	miRNA
Genome position	Chr8:11696628-11696692 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647385;SRR2647388;SRR1583943
Length	24
Mature sequence(if miRNA)	42 - ACUCUCGGUAAAAUAAAACACUCG - 65
Stem-loop(if miRNA)	--                  C          G   ACUCUCGGUAAAAUAAAA ACUCGGCGAA A   |||||||||||||||||| |||||||||| A   UGAGAGCCAUUUUAUUUU UGAGCCGCUU U UU                  A          G
Stem-loop sequence	ACUCUCGGUAAAAUAAAACACUCGGCGAAGAAUGUUCGCCGAGUAUUUUAUUUUACCGAGAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1   ||||||||||*||||||||||=|| targets:95   CGAGUGUUUUCUUUUACCGAGGGU   118 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1   ||||||||||*||||||||||=|| targets:95   CGAGUGUUUUCUUUUACCGAGGGU   118 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1   ||||||||||*||||||||||=|| targets:2114   CGAGUGUUUUCUUUUACCGAGGGU   2137 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1   ||||||||||*||||||||||=|| targets:2114   CGAGUGUUUUCUUUUACCGAGGGU   2137 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1   ||||*|||||*||||||||||=|| targets:1128   CGAGGGUUUUCUUUUACCGAGGGU   1151 Target Full Sequence	2.5	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget