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BaseInfo

ncRNA ID novel_zma_miR5831
Species Zea mays
Class miRNA
Genome position Chr8:11696628-11696692 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647385;SRR2647388;SRR1583943
Length 24
Mature sequence(if miRNA) 42 - ACUCUCGGUAAAAUAAAACACUCG - 65
Stem-loop(if miRNA) --                  C          G
  ACUCUCGGUAAAAUAAAA ACUCGGCGAA A
  |||||||||||||||||| |||||||||| A
  UGAGAGCCAUUUUAUUUU UGAGCCGCUU U
UU                  A          G
Stem-loop sequence ACUCUCGGUAAAAUAAAACACUCGGCGAAGAAUGUUCGCCGAGUAUUUUAUUUUACCGAGAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001165647.1
ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1
  ||||||||||*||||||||||=||
targets:95   CGAGUGUUUUCUUUUACCGAGGGU   118

2.5 Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA NA coding protein psRNATarget
BT055423.1
ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1
  ||||||||||*||||||||||=||
targets:95   CGAGUGUUUUCUUUUACCGAGGGU   118

2.5 Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds NA coding protein psRNATarget
BT054268.1
ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1
  ||||||||||*||||||||||=||
targets:2114   CGAGUGUUUUCUUUUACCGAGGGU   2137

2.5 Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds NA coding protein psRNATarget
NM_001152461.1
ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1
  ||||||||||*||||||||||=||
targets:2114   CGAGUGUUUUCUUUUACCGAGGGU   2137

2.5 Zea mays uncharacterized LOC100279456 (IDP836), mRNA NA coding protein psRNATarget
XM_020543430.1
ncRNA:24   GCUCACAAAAUAAAAUGGCUCUCA   1
  ||||*|||||*||||||||||=||
targets:1128   CGAGGGUUUUCUUUUACCGAGGGU   1151

2.5 PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA NA coding protein psRNATarget