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BaseInfo

ncRNA ID novel_zma_miR5828
Species Zea mays
Class miRNA
Genome position Chr8:18526593-18526727 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - CGGUCCGCGACCUGGUGUAGGAGC - 24
Stem-loop(if miRNA) U    --GG     -       G    GC     A G   --    G       A      GC   -   G
 CUCU    UCAGG CGCGGAC GUCC  GGCCC G GCC  GGAC GUCCGCG CCUGGC  GAG GCG C
 ||||    ||||| ||||||| ||||  ||||| | |||  |||| ||||||| ||||||  ||| |||
 GAGG    GGUCC GCGCCUG CAGG  CCGGG C CGG  CCUG CAGGCGC GGACUG  CUC CGU G
C    AUGU     A       G    --     A G   CG    G       -      GU   U   G
Stem-loop sequence UCUCUGGUCAGGCGCGGACGGUCCGCGGCCCAGGGCCGGACGGUCCGCGACCUGGCGCGAGGCGGCGGUGCUCUCUGGUCAGGCGCGGACGGUCCGCGGCGCAGGGCCGGACGGUCCGCGACCUGGUGUAGGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT039435.1
ncRNA:24   CGAGGAUGUGGUCCAGCGCCUGGC   1
  ||*=||||=||||||=||||||||
targets:264   GCCUCUACGCCAGGUUGCGGACCG   287

2.5 Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds NA coding protein psRNATarget