ncRNA ID | novel_zma_miR5828 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr8:18526593-18526727 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CGGUCCGCGACCUGGUGUAGGAGC - 24 |
Stem-loop(if miRNA) |
U    --GG     -       G    GC     A G   --    G       A      GC   -   G  CUCU    UCAGG CGCGGAC GUCC  GGCCC G GCC  GGAC GUCCGCG CCUGGC  GAG GCG C  ||||    ||||| ||||||| ||||  ||||| | |||  |||| ||||||| ||||||  ||| |||  GAGG    GGUCC GCGCCUG CAGG  CCGGG C CGG  CCUG CAGGCGC GGACUG  CUC CGU G C    AUGU     A       G    --     A G   CG    G       -      GU   U   G |
Stem-loop sequence | UCUCUGGUCAGGCGCGGACGGUCCGCGGCCCAGGGCCGGACGGUCCGCGACCUGGCGCGAGGCGGCGGUGCUCUCUGGUCAGGCGCGGACGGUCCGCGGCGCAGGGCCGGACGGUCCGCGACCUGGUGUAGGAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT039435.1 |
|
2.5 | Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds | NA | coding protein | psRNATarget |