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BaseInfo

ncRNA ID novel_zma_miR5827
Species Zea mays
Class miRNA
Genome position Chr5:81991933-81991989 [+]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 1 - AUUGAGAUGGAUUGAAGUGUAACU - 24
Stem-loop(if miRNA) --      A        A      C   
  AUUGAG UGGAUUGA GUGUAA UUAG
  |||||| |||||||| |||||| |||U
  UAACUC ACCUAACU CACAUU AAUU
CA      C        C      U   
Stem-loop sequence AUUGAGAUGGAUUGAAGUGUAACUUAGUUUAAUUUACACCUCAAUCCACCUCAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163690.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  ||||||||*|||||||||||||||
targets:58   AGUUACACCUCAAUCCAUCUCAAU   81

1.0 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  ||||||||*|||||||||||||||
targets:58   AGUUACACCUCAAUCCAUCUCAAU   81

1.0 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  ||||||||*|||||||||||||||
targets:58   AGUUACACCUCAAUCCAUCUCAAU   81

1.0 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
XM_008667124.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  ||*||||||*||||||||||||||
targets:2577   AGCUACACUGCAAUCCAUCUCAAU   2600

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008667123.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  ||*||||||*||||||||||||||
targets:2555   AGCUACACUGCAAUCCAUCUCAAU   2578

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008652768.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*|||||||*||||||||||||||
targets:1455   AAUUACACUCCAAUCCAUCUCAAU   1478

1.0 PREDICTED: Zea mays Retinol dehydrogenase 14 (LOC100217007), transcript variant X1, mRNA NA coding protein psRNATarget
BT037764.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*|||||||*||||||||||||||
targets:1393   AAUUACACUCCAAUCCAUCUCAAU   1416

1.0 Zea mays full-length cDNA clone ZM_BFb0194F11 mRNA, complete cds NA coding protein psRNATarget
NM_001143383.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*|||||||*||||||||||||||
targets:1393   AAUUACACUCCAAUCCAUCUCAAU   1416

1.0 Zea mays Retinol dehydrogenase 14 (LOC100217007), mRNA NA coding protein psRNATarget
AY103888.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*|||||||*||||||||||||||
targets:1378   AAUUACACUCCAAUCCAUCUCAAU   1401

1.0 Zea mays PCO108132 mRNA sequence NA coding protein psRNATarget
EZ086295.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*|||||||*||||||||||||||
targets:611   AAUUACACUCCAAUCCAUCUCAAU   634

1.0 TSA: Zea mays contig21941, mRNA sequence NA coding protein psRNATarget
EU941642.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  =|||||||*||||||||*||||||
targets:6   GGUUACACCUCAAUCCACCUCAAU   29

2.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
XM_008665409.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGU-UA   1
  ***|||||||||||||||||||-||
targets:3405   UAAUACACUUCAAUCCAUCUCAUAU   3429

3.0 PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008665407.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGU-UA   1
  ***|||||||||||||||||||-||
targets:3384   UAAUACACUUCAAUCCAUCUCAUAU   3408

3.0 PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X1, mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  *|||||||*||||||||*||||||
targets:879   UGUUACACCUCAAUCCACCUCAAU   902

2.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  *|||||||*||||||||*||||||
targets:879   UGUUACACCUCAAUCCACCUCAAU   902

2.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
XM_020546921.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*|||||=*||||||||||||||*
targets:2124   AUUUACAUCUCAAUCCAUCUCAAC   2147

3.0 PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA NA coding protein psRNATarget
XM_008659899.2
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  |*||||||*|*|||||||||||||
targets:2117   AAUUACACCUAAAUCCAUCUCAAU   2140

2.0 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
LQ235126.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  **||||||**||||||||||||||
targets:54   CUUUACACCCCAAUCCAUCUCAAU   77

2.0 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
JB163457.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  **||||||**||||||||||||||
targets:54   CUUUACACCCCAAUCCAUCUCAAU   77

2.0 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
HI402996.1
ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1
  **||||||**||||||||||||||
targets:54   CUUUACACCCCAAUCCAUCUCAAU   77

2.0 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget