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BaseInfo

ncRNA ID	novel_zma_miR5827
Species	Zea mays
Class	miRNA
Genome position	Chr5:81991933-81991989 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	1 - AUUGAGAUGGAUUGAAGUGUAACU - 24
Stem-loop(if miRNA)	--      A        A      C      AUUGAG UGGAUUGA GUGUAA UUAG   |||||| |||||||| |||||| |||U   UAACUC ACCUAACU CACAUU AAUU CA      C        C      U
Stem-loop sequence	AUUGAGAUGGAUUGAAGUGUAACUUAGUUUAAUUUACACCUCAAUCCACCUCAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163690.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   ||||||||*||||||||||||||| targets:58   AGUUACACCUCAAUCCAUCUCAAU   81 Target Full Sequence	1.0	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   ||||||||*||||||||||||||| targets:58   AGUUACACCUCAAUCCAUCUCAAU   81 Target Full Sequence	1.0	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   ||||||||*||||||||||||||| targets:58   AGUUACACCUCAAUCCAUCUCAAU   81 Target Full Sequence	1.0	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   ||*||||||*|||||||||||||| targets:2577   AGCUACACUGCAAUCCAUCUCAAU   2600 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   ||*||||||*|||||||||||||| targets:2555   AGCUACACUGCAAUCCAUCUCAAU   2578 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652768.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*|||||||*|||||||||||||| targets:1455   AAUUACACUCCAAUCCAUCUCAAU   1478 Target Full Sequence	1.0	PREDICTED: Zea mays Retinol dehydrogenase 14 (LOC100217007), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT037764.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*|||||||*|||||||||||||| targets:1393   AAUUACACUCCAAUCCAUCUCAAU   1416 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0194F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143383.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*|||||||*|||||||||||||| targets:1393   AAUUACACUCCAAUCCAUCUCAAU   1416 Target Full Sequence	1.0	Zea mays Retinol dehydrogenase 14 (LOC100217007), mRNA	NA	coding protein	psRNATarget
AY103888.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*|||||||*|||||||||||||| targets:1378   AAUUACACUCCAAUCCAUCUCAAU   1401 Target Full Sequence	1.0	Zea mays PCO108132 mRNA sequence	NA	coding protein	psRNATarget
EZ086295.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*|||||||*|||||||||||||| targets:611   AAUUACACUCCAAUCCAUCUCAAU   634 Target Full Sequence	1.0	TSA: Zea mays contig21941, mRNA sequence	NA	coding protein	psRNATarget
EU941642.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   =|||||||*||||||||*|||||| targets:6   GGUUACACCUCAAUCCACCUCAAU   29 Target Full Sequence	2.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
XM_008665409.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGU-UA   1   ***|||||||||||||||||||-|| targets:3405   UAAUACACUUCAAUCCAUCUCAUAU   3429 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665407.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGU-UA   1   ***|||||||||||||||||||-|| targets:3384   UAAUACACUUCAAUCCAUCUCAUAU   3408 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SNF2-domain/RING finger domain/helicase domain protein (LOC103642087), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   *|||||||*||||||||*|||||| targets:879   UGUUACACCUCAAUCCACCUCAAU   902 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   *|||||||*||||||||*|||||| targets:879   UGUUACACCUCAAUCCACCUCAAU   902 Target Full Sequence	2.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
XM_020546921.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*|||||=*||||||||||||||* targets:2124   AUUUACAUCUCAAUCCAUCUCAAC   2147 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA	NA	coding protein	psRNATarget
XM_008659899.2	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   |*||||||*|*||||||||||||| targets:2117   AAUUACACCUAAAUCCAUCUCAAU   2140 Target Full Sequence	2.0	PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   **||||||**|||||||||||||| targets:54   CUUUACACCCCAAUCCAUCUCAAU   77 Target Full Sequence	2.0	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
JB163457.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   **||||||**|||||||||||||| targets:54   CUUUACACCCCAAUCCAUCUCAAU   77 Target Full Sequence	2.0	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
HI402996.1	ncRNA:24   UCAAUGUGAAGUUAGGUAGAGUUA   1   **||||||**|||||||||||||| targets:54   CUUUACACCCCAAUCCAUCUCAAU   77 Target Full Sequence	2.0	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget