ncRNA ID | novel_zma_miR5825 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr8:98140205-98140359 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647221;SRR1583943 |
Length | 24 |
Mature sequence(if miRNA) | 132 - UUUUAAAUCUGAGACAUCCAUCUC - 155 |
Stem-loop(if miRNA) |
--          -   A         C    C    ---  C   ACC           AAA         ACCUCCUUCCCA    G   UUUUAAAUCU GAG CAUCCAUCU AUAU UAAC   AG AGC   AAUUUUAUAAA   AACUCUUCU            UGGC A   |||||||||| ||| ||||||||| |||| ||||   || |||   |||||||||||   |||||||||            ||||   AAAAUUUAGA CUC GUAGGUAGA UGUA GUUG   UC UCG   UUAAAAUGUUU   UUGGGGAGA            ACCG G GU          U   -         A    A    CCA  C   --A           --G         ------------    A |
Stem-loop sequence | UUUUAAAUCUGAGACAUCCAUCUCAUAUCUAACAGCAGCACCAAUUUUAUAAAAAAAACUCUUCUACCUCCUUCCCAUGGCGAGAGCCAAGAGGGGUUGUUUGUAAAAUUAGCUCCUACCGUUGAAUGUAAGAUGGAUGCUCUAGAUUUAAAAUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008661793.2 |
|
1.5 | PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008661794.2 |
|
1.5 | PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
BT085417.2 |
|
2.5 | Zea mays full-length cDNA clone ZM_BFc0009E13 mRNA, complete cds | NA | coding protein | psRNATarget |