Search result

BaseInfo

ncRNA ID	novel_zma_miR5825
Species	Zea mays
Class	miRNA
Genome position	Chr8:98140205-98140359 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR1583943
Length	24
Mature sequence(if miRNA)	132 - UUUUAAAUCUGAGACAUCCAUCUC - 155
Stem-loop(if miRNA)	--          -   A         C    C    ---  C   ACC           AAA         ACCUCCUUCCCA    G   UUUUAAAUCU GAG CAUCCAUCU AUAU UAAC   AG AGC   AAUUUUAUAAA   AACUCUUCU            UGGC A   |||||||||| ||| ||||||||| |||| ||||   || |||   |||||||||||   |||||||||            ||||   AAAAUUUAGA CUC GUAGGUAGA UGUA GUUG   UC UCG   UUAAAAUGUUU   UUGGGGAGA            ACCG G GU          U   -         A    A    CCA  C   --A           --G         ------------    A
Stem-loop sequence	UUUUAAAUCUGAGACAUCCAUCUCAUAUCUAACAGCAGCACCAAUUUUAUAAAAAAAACUCUUCUACCUCCUUCCCAUGGCGAGAGCCAAGAGGGGUUGUUUGUAAAAUUAGCUCCUACCGUUGAAUGUAAGAUGGAUGCUCUAGAUUUAAAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661793.2	ncRNA:24   CUCUACCUACAGAGUCUAAAUUUU   1   *=|||||||||=|||||||||||| targets:1037   UGGAUGGAUGUUUCAGAUUUAAAA   1060 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661794.2	ncRNA:24   CUCUACCUACAGAGUCUAAAUUUU   1   *=|||||||||=|||||||||||| targets:1046   UGGAUGGAUGUUUCAGAUUUAAAA   1069 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085417.2	ncRNA:24   CUCUACCUACAGAGUCUAAAUUUU   1   ||*|*||||*|||||||||*|||| targets:310   GACAAGGAUAUCUCAGAUUAAAAA   333 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009E13 mRNA, complete cds	NA	coding protein	psRNATarget