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BaseInfo

ncRNA ID novel_zma_miR5825
Species Zea mays
Class miRNA
Genome position Chr8:98140205-98140359 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR1583943
Length 24
Mature sequence(if miRNA) 132 - UUUUAAAUCUGAGACAUCCAUCUC - 155
Stem-loop(if miRNA) --          -   A         C    C    ---  C   ACC           AAA         ACCUCCUUCCCA    G
  UUUUAAAUCU GAG CAUCCAUCU AUAU UAAC   AG AGC   AAUUUUAUAAA   AACUCUUCU            UGGC A
  |||||||||| ||| ||||||||| |||| ||||   || |||   |||||||||||   |||||||||            ||||
  AAAAUUUAGA CUC GUAGGUAGA UGUA GUUG   UC UCG   UUAAAAUGUUU   UUGGGGAGA            ACCG G
GU          U   -         A    A    CCA  C   --A           --G         ------------    A
Stem-loop sequence UUUUAAAUCUGAGACAUCCAUCUCAUAUCUAACAGCAGCACCAAUUUUAUAAAAAAAACUCUUCUACCUCCUUCCCAUGGCGAGAGCCAAGAGGGGUUGUUUGUAAAAUUAGCUCCUACCGUUGAAUGUAAGAUGGAUGCUCUAGAUUUAAAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661793.2
ncRNA:24   CUCUACCUACAGAGUCUAAAUUUU   1
  *=|||||||||=||||||||||||
targets:1037   UGGAUGGAUGUUUCAGAUUUAAAA   1060

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661794.2
ncRNA:24   CUCUACCUACAGAGUCUAAAUUUU   1
  *=|||||||||=||||||||||||
targets:1046   UGGAUGGAUGUUUCAGAUUUAAAA   1069

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA NA coding protein psRNATarget
BT085417.2
ncRNA:24   CUCUACCUACAGAGUCUAAAUUUU   1
  ||*|*||||*|||||||||*||||
targets:310   GACAAGGAUAUCUCAGAUUAAAAA   333

2.5 Zea mays full-length cDNA clone ZM_BFc0009E13 mRNA, complete cds NA coding protein psRNATarget