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BaseInfo

ncRNA ID novel_zma_miR5824
Species Zea mays
Class miRNA
Genome position Chr8:107444131-107444274 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 121 - ACUCACGUGCACAUUUUAAAUCUG - 144
Stem-loop(if miRNA) --AC   C                  AA    C     C    C    A   G  -                C
    UCA GUGCACAUUUUAAAUCUG  AUAU UAUUU GUAU UAAC GCA CA CUAAUUUUAUGAAGAA C
    ||| ||||||||||||||||||  |||| ||||| |||| |||| ||| || ||||||||||||||||
    AGU CACGUGUAAAAUUUAGAU  UGUA GUGAA CGUA GUUG UGU GU GAUUAAAAUACUUCUU U
CAUU   A                  CA    A     -    A    C   G  C                U
Stem-loop sequence ACUCACGUGCACAUUUUAAAUCUGAAAUAUCUAUUUCGUAUCUAACAGCAGCACUAAUUUUAUGAAGAACCUUUUCUUCAUAAAAUUAGCUGGUGUCGUUGAAUGCAAGUGAAUGUACUAGAUUUAAAAUGUGCACAUGAUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661793.2
ncRNA:24   GUCUAAAUUUUACACGUGCACUCA   1
  |||||||||||||||||||||||*
targets:1050   CAGAUUUAAAAUGUGCACGUGAGC   1073

1.0 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661794.2
ncRNA:24   GUCUAAAUUUUACACGUGCACUCA   1
  |||||||||||||||||||||||*
targets:1059   CAGAUUUAAAAUGUGCACGUGAGC   1082

1.0 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020553522.1
ncRNA:24   GUCUAAAUUUUACACGUGCACUCA   1
  =||||||||||||||||||||||*
targets:6   UAGAUUUAAAAUGUGCACGUGAGC   29

1.0 PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645476.2
ncRNA:24   GUCUAAAUUUUACACGUGCACUCA   1
  ||||||||||||||||||*||||*
targets:906   CAGAUUUAAAAUGUGCACAUGAGC   929

2.5 PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA NA coding protein psRNATarget