ncRNA ID | novel_zma_miR5824 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr8:107444131-107444274 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 24 |
Mature sequence(if miRNA) | 121 - ACUCACGUGCACAUUUUAAAUCUG - 144 |
Stem-loop(if miRNA) |
--AC   C                  AA    C     C    C    A   G  -                C     UCA GUGCACAUUUUAAAUCUG  AUAU UAUUU GUAU UAAC GCA CA CUAAUUUUAUGAAGAA C     ||| ||||||||||||||||||  |||| ||||| |||| |||| ||| || ||||||||||||||||     AGU CACGUGUAAAAUUUAGAU  UGUA GUGAA CGUA GUUG UGU GU GAUUAAAAUACUUCUU U CAUU   A                  CA    A     -    A    C   G  C                U |
Stem-loop sequence | ACUCACGUGCACAUUUUAAAUCUGAAAUAUCUAUUUCGUAUCUAACAGCAGCACUAAUUUUAUGAAGAACCUUUUCUUCAUAAAAUUAGCUGGUGUCGUUGAAUGCAAGUGAAUGUACUAGAUUUAAAAUGUGCACAUGAUUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008661793.2 |
|
1.0 | PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008661794.2 |
|
1.0 | PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020553522.1 |
|
1.0 | PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008645476.2 |
|
2.5 | PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA | NA | coding protein | psRNATarget |