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BaseInfo

ncRNA ID	novel_zma_miR5810
Species	Zea mays
Class	miRNA
Genome position	Chr7:125227998-125228126 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	23
Mature sequence(if miRNA)	1 - UCUUAGAUCUAACGUCUCUGGUU - 23
Stem-loop(if miRNA)	--         U  CG   C  G   C  UA        AC   G     UA    AAGUG  A   UCUUAGAUC AA  UCU UG UUG UC  UAUAUUUU  AAA AACAU  UCUG     AU G   ||||||||| ||  ||| || ||| ||  ||||||||  ||| |||||  ||||     || A   AGAGUCUAG UU  AGA AC AAC AG  AUAUAAAA  UUU UUGUG  AGGU     UG G GU         U  AU   A  G   A  CA        CA   A     GA    GAUGA  U
Stem-loop sequence	UCUUAGAUCUAACGUCUCUGGUUGCUCUAUAUAUUUUACAAAGAACAUUAUCUGAAGUGAUAGAGUGUAGUAGUGGAAGGUGUUAUUUACAAAAUAUAACGAACAAGCAAAGAUAUUUGAUCUGAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ092927.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||||||||||||||||||=||| targets:82   AACCAGAGACGUUAGAUCUGAGA   104 Target Full Sequence	1.5	TSA: Zea mays contig28576, mRNA sequence	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:124   AACUAGAGACGUUAGAUCUAAAA   146 Target Full Sequence	1.5	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
HI403383.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:124   AACUAGAGACGUUAGAUCUAAAA   146 Target Full Sequence	1.5	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:124   AACUAGAGACGUUAGAUCUAAAA   146 Target Full Sequence	1.5	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403274.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:125   AACUAGAGACGUUAGAUCUAAAA   147 Target Full Sequence	1.5	Sequence 1399 from Patent EP2074227	NA	coding protein	psRNATarget
JB163735.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:125   AACUAGAGACGUUAGAUCUAAAA   147 Target Full Sequence	1.5	Sequence 1399 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235404.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:125   AACUAGAGACGUUAGAUCUAAAA   147 Target Full Sequence	1.5	Sequence 1399 from Patent EP2985353	NA	coding protein	psRNATarget
JB163879.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||=||||||||||||||||||*| targets:136   AAUCAGAGACGUUAGAUCUAAAA   158 Target Full Sequence	1.5	Sequence 1543 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235548.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||=||||||||||||||||||*| targets:136   AAUCAGAGACGUUAGAUCUAAAA   158 Target Full Sequence	1.5	Sequence 1543 from Patent EP2985353	NA	coding protein	psRNATarget
HI403418.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||=||||||||||||||||||*| targets:136   AAUCAGAGACGUUAGAUCUAAAA   158 Target Full Sequence	1.5	Sequence 1543 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008646350.2	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:1719   AACUAGAGACGUUAGAUCUAAAA   1741 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA	NA	coding protein	psRNATarget
XM_020552764.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:3070   AACUAGAGACGUUAGAUCUAAAA   3092 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||||||||||||||||*| targets:3248   AACUAGAGACGUUAGAUCUAAAA   3270 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||==|||||||||||||||||*| targets:124   AAUUAGAGACGUUAGAUCUAAAA   146 Target Full Sequence	1.5	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
JB163685.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||==|||||||||||||||||*| targets:124   AAUUAGAGACGUUAGAUCUAAAA   146 Target Full Sequence	1.5	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
HI403224.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||==|||||||||||||||||*| targets:124   AAUUAGAGACGUUAGAUCUAAAA   146 Target Full Sequence	1.5	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235360.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:124   AACUAUAGACGUUAGAUCUAAAA   146 Target Full Sequence	2.5	Sequence 1355 from Patent EP2985353	NA	coding protein	psRNATarget
HI403230.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:124   AACUAUAGACGUUAGAUCUAAAA   146 Target Full Sequence	2.5	Sequence 1355 from Patent EP2074227	NA	coding protein	psRNATarget
HI403366.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:124   AACUAUAGACGUUAGAUCUAAAA   146 Target Full Sequence	2.5	Sequence 1491 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235496.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:124   AACUAUAGACGUUAGAUCUAAAA   146 Target Full Sequence	2.5	Sequence 1491 from Patent EP2985353	NA	coding protein	psRNATarget
JB163691.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:124   AACUAUAGACGUUAGAUCUAAAA   146 Target Full Sequence	2.5	Sequence 1355 from Patent EP2559767	NA	coding protein	psRNATarget
JB163827.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:124   AACUAUAGACGUUAGAUCUAAAA   146 Target Full Sequence	2.5	Sequence 1491 from Patent EP2559767	NA	coding protein	psRNATarget
HI409543.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:136   AACUAAAGACGUUAGAUCUAAAA   158 Target Full Sequence	2.5	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
JB170004.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:136   AACUAAAGACGUUAGAUCUAAAA   158 Target Full Sequence	2.5	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|*|||||||||||||||*| targets:136   AACUAAAGACGUUAGAUCUAAAA   158 Target Full Sequence	2.5	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
BT016456.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   ||=||*|||||||||||||*||| targets:169   AAUCAUAGACGUUAGAUCUUAGA   191 Target Full Sequence	2.5	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget
BT037068.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||*|||||||||||||*| targets:1021   AACUAGAAACGUUAGAUCUAAAA   1043 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||*|||||||||||||*| targets:986   AACUAGAAACGUUAGAUCUAAAA   1008 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||*|||||||||||||*| targets:1166   AACUAGAAACGUUAGAUCUAAAA   1188 Target Full Sequence	2.5	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||*|||||||||||||*| targets:2134   AACUAGAAACGUUAGAUCUAAAA   2156 Target Full Sequence	2.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   |||=|||*|||||||||||||*| targets:2143   AACUAGAAACGUUAGAUCUAAAA   2165 Target Full Sequence	2.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU974341.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   **|||||||*|||||||||*||| targets:429   CUCCAGAGAGGUUAGAUCUCAGA   451 Target Full Sequence	2.5	Zea mays clone 446742 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT087748.1	ncRNA:23   UUGGUCUCUGCAAUCUAGAUUCU   1   **|||||||*|||||||||*||| targets:757   CUCCAGAGAGGUUAGAUCUCAGA   779 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0182N20 mRNA, complete cds	NA	coding protein	psRNATarget