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BaseInfo

ncRNA ID novel_zma_miR5808
Species Zea mays
Class miRNA
Genome position Chr7:118633051-118633178 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - AGCUUGUUCGGUUACACCAAUCCA - 24
Stem-loop(if miRNA) --A  U            C                     -        A        U     U
   GC UGUUCGGUUACA CAAUCCAGAAGGGGAUUGGAG GGGUUUAA UCCCCUCC AGUCA U
   || |||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||
   CG ACAAGCCAAUGU GUUAGGUUUUCUCCUAACCUC CCUAAGUU AGGGGAGG UCAGU U
UCC  U            A                     A        -        U     U
Stem-loop sequence AGCUUGUUCGGUUACACCAAUCCAGAAGGGGAUUGGAGGGGUUUAAAUCCCCUCCUAGUCAUUUUUGACUUGGAGGGGAUUGAAUCCACUCCAAUCCUCUUUUGGAUUGAUGUAACCGAACAUGCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548160.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  |||||||||||||||||||||||*
targets:4816   UGGAUUGGUGUAACCGAACAAGCC   4839

1.0 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  |||||||||||||||||||||||*
targets:5043   UGGAUUGGUGUAACCGAACAAGCC   5066

1.0 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238926.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  |||||||*|||||||||||||||*
targets:115   UGGAUUGAUGUAACCGAACAAGCC   138

2.0 Sequence 4921 from Patent EP2985353 NA coding protein psRNATarget
HI406796.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  |||||||*|||||||||||||||*
targets:115   UGGAUUGAUGUAACCGAACAAGCC   138

2.0 Sequence 4921 from Patent EP2074227 NA coding protein psRNATarget
JB167257.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  |||||||*|||||||||||||||*
targets:115   UGGAUUGAUGUAACCGAACAAGCC   138

2.0 Sequence 4921 from Patent EP2559767 NA coding protein psRNATarget
XM_020542894.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||||||||||||||||||||*||*
targets:19   UGGAUUGGUGUAACCGAACAUGCC   42

2.5 PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA NA coding protein psRNATarget
EU957179.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  |||||*|||||||||||||||||*
targets:1582   UGGAUCGGUGUAACCGAACAAGCC   1605

2.0 Zea mays clone 1584995 mRNA sequence NA coding protein psRNATarget
JB169089.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:79   UGAAUUGGUGUAACCGAACAAACC   102

2.5 Sequence 6753 from Patent EP2559767 NA coding protein psRNATarget
HI408628.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:79   UGAAUUGGUGUAACCGAACAAACC   102

2.5 Sequence 6753 from Patent EP2074227 NA coding protein psRNATarget
LQ240758.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:79   UGAAUUGGUGUAACCGAACAAACC   102

2.5 Sequence 6753 from Patent EP2985353 NA coding protein psRNATarget
EU968801.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*|||||||||||||||||*||*
targets:547   UGAAUUGGUGUAACCGAACAUGCC   570

2.5 Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds NA coding protein psRNATarget
NM_001157439.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*|||||||||||||||||*||*
targets:547   UGAAUUGGUGUAACCGAACAUGCC   570

2.5 Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA NA coding protein psRNATarget
BT060810.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:1582   UGAAUUGGUGUAACCGAACAAACC   1605

2.5 Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds NA coding protein psRNATarget
NM_001148650.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:1683   UGAAUUGGUGUAACCGAACAAACC   1706

2.5 Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA NA coding protein psRNATarget
BT042688.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:1683   UGAAUUGGUGUAACCGAACAAACC   1706

2.5 Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds NA coding protein psRNATarget
EU971133.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  ||*||||||||||||||||||*|*
targets:1590   UGAAUUGGUGUAACCGAACAAACC   1613

2.5 Zea mays clone 358078 mRNA sequence NA coding protein psRNATarget
EU949284.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  *||=||*|*||||||||||||||*
targets:657   AGGGUUAGCGUAACCGAACAAGCC   680

3.0 Zea mays clone 400720 mRNA sequence NA coding protein psRNATarget
DQ244893.1
ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1
  *||=||*|*||||||||||||||*
targets:757   AGGGUUAGCGUAACCGAACAAGCC   780

3.0 Zea mays clone 11585 mRNA sequence NA coding protein psRNATarget