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BaseInfo

ncRNA ID	novel_zma_miR5808
Species	Zea mays
Class	miRNA
Genome position	Chr7:118633051-118633178 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - AGCUUGUUCGGUUACACCAAUCCA - 24
Stem-loop(if miRNA)	--A  U            C                     -        A        U     U    GC UGUUCGGUUACA CAAUCCAGAAGGGGAUUGGAG GGGUUUAA UCCCCUCC AGUCA U    || |||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||    CG ACAAGCCAAUGU GUUAGGUUUUCUCCUAACCUC CCUAAGUU AGGGGAGG UCAGU U UCC  U            A                     A        -        U     U
Stem-loop sequence	AGCUUGUUCGGUUACACCAAUCCAGAAGGGGAUUGGAGGGGUUUAAAUCCCCUCCUAGUCAUUUUUGACUUGGAGGGGAUUGAAUCCACUCCAAUCCUCUUUUGGAUUGAUGUAACCGAACAUGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   |||||||||||||||||||||||* targets:4816   UGGAUUGGUGUAACCGAACAAGCC   4839 Target Full Sequence	1.0	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   |||||||||||||||||||||||* targets:5043   UGGAUUGGUGUAACCGAACAAGCC   5066 Target Full Sequence	1.0	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   |||||||*|||||||||||||||* targets:115   UGGAUUGAUGUAACCGAACAAGCC   138 Target Full Sequence	2.0	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   |||||||*|||||||||||||||* targets:115   UGGAUUGAUGUAACCGAACAAGCC   138 Target Full Sequence	2.0	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   |||||||*|||||||||||||||* targets:115   UGGAUUGAUGUAACCGAACAAGCC   138 Target Full Sequence	2.0	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||||||||||||||||||||*||* targets:19   UGGAUUGGUGUAACCGAACAUGCC   42 Target Full Sequence	2.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   |||||*|||||||||||||||||* targets:1582   UGGAUCGGUGUAACCGAACAAGCC   1605 Target Full Sequence	2.0	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
JB169089.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:79   UGAAUUGGUGUAACCGAACAAACC   102 Target Full Sequence	2.5	Sequence 6753 from Patent EP2559767	NA	coding protein	psRNATarget
HI408628.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:79   UGAAUUGGUGUAACCGAACAAACC   102 Target Full Sequence	2.5	Sequence 6753 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240758.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:79   UGAAUUGGUGUAACCGAACAAACC   102 Target Full Sequence	2.5	Sequence 6753 from Patent EP2985353	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*|||||||||||||||||*||* targets:547   UGAAUUGGUGUAACCGAACAUGCC   570 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*|||||||||||||||||*||* targets:547   UGAAUUGGUGUAACCGAACAUGCC   570 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
BT060810.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:1582   UGAAUUGGUGUAACCGAACAAACC   1605 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:1683   UGAAUUGGUGUAACCGAACAAACC   1706 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget
BT042688.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:1683   UGAAUUGGUGUAACCGAACAAACC   1706 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU971133.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   ||*||||||||||||||||||*|* targets:1590   UGAAUUGGUGUAACCGAACAAACC   1613 Target Full Sequence	2.5	Zea mays clone 358078 mRNA sequence	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   *||=||*|*||||||||||||||* targets:657   AGGGUUAGCGUAACCGAACAAGCC   680 Target Full Sequence	3.0	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   ACCUAACCACAUUGGCUUGUUCGA   1   *||=||*|*||||||||||||||* targets:757   AGGGUUAGCGUAACCGAACAAGCC   780 Target Full Sequence	3.0	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget