ncRNA ID | novel_zma_miR5806 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr7:104624696-104624820 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGACUUUAUAUUGUUGUGAUAUUU - 24 |
Stem-loop(if miRNA) |
--     U    UU    U       G  G U    U   -  AAUGA      G    UUUA   UGACU UAUA  GUUG GAUAUUU GA U UAUG GGU CA     UGCUAG AUUG    A   ||||| ||||  |||| ||||||| || | |||| ||| ||     |||||| ||||    U   ACUGG GUAU  UAGU UUAUAAA UU G GUAU UCA GU     AUGAUU UAAU    A AA     U    UU    U       G  G U    U   A  AUCGA      -    UUGU |
Stem-loop sequence | UGACUUUAUAUUGUUGUGAUAUUUGGAGUUUAUGUGGUCAAAUGAUGCUAGGAUUGUUUAAUAUGUUUAAUUUAGUAAGCUAUGAACUUUAUGUGGUUGAAAUAUUUUGAUUUUAUGUGGUCAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020550316.1 |
|
1.0 | PREDICTED: Zea mays ARF guanine-nucleotide exchange factor GNL2 (LOC103652202), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020545035.1 |
|
2.5 | PREDICTED: Zea mays aconitase 2 (aco2), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020545034.1 |
|
2.5 | PREDICTED: Zea mays aconitase 2 (aco2), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020543924.1 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC103637993 (LOC103637993), mRNA | NA | coding protein | psRNATarget |