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BaseInfo

ncRNA ID novel_zma_miR5806
Species Zea mays
Class miRNA
Genome position Chr7:104624696-104624820 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - UGACUUUAUAUUGUUGUGAUAUUU - 24
Stem-loop(if miRNA) --     U    UU    U       G  G U    U   -  AAUGA      G    UUUA
  UGACU UAUA  GUUG GAUAUUU GA U UAUG GGU CA     UGCUAG AUUG    A
  ||||| ||||  |||| ||||||| || | |||| ||| ||     |||||| ||||    U
  ACUGG GUAU  UAGU UUAUAAA UU G GUAU UCA GU     AUGAUU UAAU    A
AA     U    UU    U       G  G U    U   A  AUCGA      -    UUGU
Stem-loop sequence UGACUUUAUAUUGUUGUGAUAUUUGGAGUUUAUGUGGUCAAAUGAUGCUAGGAUUGUUUAAUAUGUUUAAUUUAGUAAGCUAUGAACUUUAUGUGGUUGAAAUAUUUUGAUUUUAUGUGGUCAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550316.1
ncRNA:24   UUUAUAGUGUUGUUAUAUUUCAGU   1
  ||||||*|||||||||||||||||
targets:17   AAAUAUAACAACAAUAUAAAGUCA   40

1.0 PREDICTED: Zea mays ARF guanine-nucleotide exchange factor GNL2 (LOC103652202), mRNA NA coding protein psRNATarget
XM_020545035.1
ncRNA:24   UUUAUAGUGUUGUUAUAUUUCAGU   1
  ||||||*|||||||||||||*|||
targets:3407   AAAUAUAACAACAAUAUAAACUCA   3430

2.5 PREDICTED: Zea mays aconitase 2 (aco2), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545034.1
ncRNA:24   UUUAUAGUGUUGUUAUAUUUCAGU   1
  ||||||*|||||||||||||*|||
targets:3090   AAAUAUAACAACAAUAUAAACUCA   3113

2.5 PREDICTED: Zea mays aconitase 2 (aco2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543924.1
ncRNA:24   UUUAUAGUGUUGUUAUAUUUCAGU   1
  ||||||*|||||||||||||*|||
targets:46   AAAUAUAACAACAAUAUAAACUCA   69

2.5 PREDICTED: Zea mays uncharacterized LOC103637993 (LOC103637993), mRNA NA coding protein psRNATarget