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BaseInfo

ncRNA ID	novel_zma_miR5804
Species	Zea mays
Class	miRNA
Genome position	Chr7:59051764-59051832 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	23
Mature sequence(if miRNA)	47 - GACGGAGCUAGCAGCGUGAUGUU - 69
Stem-loop(if miRNA)	--     U    -  --  G    A   AGAAAU    A   CAUCA CGUU CU  CU CGUC UCA      CCCA G   ||||| |||| ||  || |||| |||      |||| A   GUAGU GCGA GA  GA GCAG AGU      GGGU G UU     -    C  UC  G    A   ------    U
Stem-loop sequence	CAUCAUCGUUCUCUGCGUCAUCAAGAAAUCCCAAGAGUUGGGUGAAGACGGAGCUAGCAGCGUGAUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001174589.1	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   |||||||=|||||||||||=||| targets:493   AACAUCAUGCUGCUAGCUCUGUC   515 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381790 (LOC100381790), mRNA	NA	coding protein	psRNATarget
BT062273.2	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   |||||||=|||||||||||=||| targets:493   AACAUCAUGCUGCUAGCUCUGUC   515 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274A18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196869.1	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   ||=|||=|||||||||||=|||| targets:367   AAUAUCGCGCUGCUAGCUUCGUC   389 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502391 (LOC100502391), mRNA	NA	coding protein	psRNATarget
BT087983.2	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   ||=|||=|||||||||||=|||| targets:367   AAUAUCGCGCUGCUAGCUUCGUC   389 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0339E22 mRNA, complete cds	NA	coding protein	psRNATarget
BT084349.2	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   ||=|||=|||||||||||=|||| targets:560   AAUAUCGCGCUGCUAGCUUCGUC   582 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0104E13 mRNA, complete cds	NA	coding protein	psRNATarget
BT067225.2	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   ||||*|||||||||||||=|||| targets:1106   AACACCACGCUGCUAGCUUCGUC   1128 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0316D21 mRNA, complete cds	NA	coding protein	psRNATarget
BT066096.2	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   ||=*||||||||||||||=|||= targets:493   AAUUUCACGCUGCUAGCUUCGUU   515 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0308O16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175744.1	ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1   ||=*||||||||||||||=|||= targets:493   AAUUUCACGCUGCUAGCUUCGUU   515 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383071 (LOC100383071), mRNA	NA	coding protein	psRNATarget