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BaseInfo

ncRNA ID novel_zma_miR5804
Species Zea mays
Class miRNA
Genome position Chr7:59051764-59051832 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 23
Mature sequence(if miRNA) 47 - GACGGAGCUAGCAGCGUGAUGUU - 69
Stem-loop(if miRNA) --     U    -  --  G    A   AGAAAU    A
  CAUCA CGUU CU  CU CGUC UCA      CCCA G
  ||||| |||| ||  || |||| |||      |||| A
  GUAGU GCGA GA  GA GCAG AGU      GGGU G
UU     -    C  UC  G    A   ------    U
Stem-loop sequence CAUCAUCGUUCUCUGCGUCAUCAAGAAAUCCCAAGAGUUGGGUGAAGACGGAGCUAGCAGCGUGAUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001174589.1
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  |||||||=|||||||||||=|||
targets:493   AACAUCAUGCUGCUAGCUCUGUC   515

2.5 Zea mays uncharacterized LOC100381790 (LOC100381790), mRNA NA coding protein psRNATarget
BT062273.2
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  |||||||=|||||||||||=|||
targets:493   AACAUCAUGCUGCUAGCUCUGUC   515

2.5 Zea mays full-length cDNA clone ZM_BFb0274A18 mRNA, complete cds NA coding protein psRNATarget
NM_001196869.1
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  ||=|||=|||||||||||=||||
targets:367   AAUAUCGCGCUGCUAGCUUCGUC   389

2.5 Zea mays uncharacterized LOC100502391 (LOC100502391), mRNA NA coding protein psRNATarget
BT087983.2
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  ||=|||=|||||||||||=||||
targets:367   AAUAUCGCGCUGCUAGCUUCGUC   389

2.5 Zea mays full-length cDNA clone ZM_BFb0339E22 mRNA, complete cds NA coding protein psRNATarget
BT084349.2
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  ||=|||=|||||||||||=||||
targets:560   AAUAUCGCGCUGCUAGCUUCGUC   582

2.5 Zea mays full-length cDNA clone ZM_BFb0104E13 mRNA, complete cds NA coding protein psRNATarget
BT067225.2
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  ||||*|||||||||||||=||||
targets:1106   AACACCACGCUGCUAGCUUCGUC   1128

2.5 Zea mays full-length cDNA clone ZM_BFb0316D21 mRNA, complete cds NA coding protein psRNATarget
BT066096.2
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  ||=*||||||||||||||=|||=
targets:493   AAUUUCACGCUGCUAGCUUCGUU   515

2.5 Zea mays full-length cDNA clone ZM_BFb0308O16 mRNA, complete cds NA coding protein psRNATarget
NM_001175744.1
ncRNA:23   UUGUAGUGCGACGAUCGAGGCAG   1
  ||=*||||||||||||||=|||=
targets:493   AAUUUCACGCUGCUAGCUUCGUU   515

2.5 Zea mays uncharacterized LOC100383071 (LOC100383071), mRNA NA coding protein psRNATarget