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BaseInfo

ncRNA ID novel_zma_miR5800
Species Zea mays
Class miRNA
Genome position Chr7:103273481-103273549 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647343
Length 24
Mature sequence(if miRNA) 1 - AGGUUCUUUGCCGAGUGCUAGGUA - 24
Stem-loop(if miRNA) --     GA      A         C C  GAGA  G
  CCUGG  CACUCG CAAAGAACC G CA    GG U
  |||||  |||||| ||||||||| | ||    ||
  GGAUC  GUGAGC GUUUCUUGG C GU    CC C
AU     --      C         A U  ---A  C
Stem-loop sequence CCUGGGACACUCGACAAAGAACCCGCCAGAGAGGGUCCCCAUGUCAGGUUCUUUGCCGAGUGCUAGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU962802.1
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUG-GA   1
  ||==||||||||||||||||||-||
targets:1121   UAUUUAGCACUCGGCAAAGAACUCU   1145

3.0 Zea mays clone 245661 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ067174.1
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1
  *=*||=||||||||||||||||||
targets:16   GGACUGGCACUCGGCAAAGAACCU   39

1.0 TSA: Zea mays contig02808, mRNA sequence NA coding protein psRNATarget
LQ238274.1
ncRNA:24   AUGG-AUCGUGAGCCGUUUCUUGGA   1
  *=||-|||||||||||||||||||*
targets:11   GGCCAUAGCACUCGGCAAAGAACCA   35

1.0 Sequence 4269 from Patent EP2985353 NA coding protein psRNATarget
JB166605.1
ncRNA:24   AUGG-AUCGUGAGCCGUUUCUUGGA   1
  *=||-|||||||||||||||||||*
targets:11   GGCCAUAGCACUCGGCAAAGAACCA   35

1.0 Sequence 4269 from Patent EP2559767 NA coding protein psRNATarget
HI406144.1
ncRNA:24   AUGG-AUCGUGAGCCGUUUCUUGGA   1
  *=||-|||||||||||||||||||*
targets:11   GGCCAUAGCACUCGGCAAAGAACCA   35

1.0 Sequence 4269 from Patent EP2074227 NA coding protein psRNATarget
JB167154.1
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1
  |*=|*=|||||||||||||||*||
targets:6   UUUCGGGCACUCGGCAAAGAAGCU   29

2.5 Sequence 4818 from Patent EP2559767 NA coding protein psRNATarget
HI406693.1
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1
  |*=|*=|||||||||||||||*||
targets:6   UUUCGGGCACUCGGCAAAGAAGCU   29

2.5 Sequence 4818 from Patent EP2074227 NA coding protein psRNATarget
LQ238823.1
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1
  |*=|*=|||||||||||||||*||
targets:6   UUUCGGGCACUCGGCAAAGAAGCU   29

2.5 Sequence 4818 from Patent EP2985353 NA coding protein psRNATarget
BT042352.1
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1
  |*==|*|||||||||||||||*||
targets:1241   UUUUUUGCACUCGGCAAAGAAGCU   1264

2.5 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1
  |*==|*|||||||||||||||*||
targets:1291   UUUUUUGCACUCGGCAAAGAAGCU   1314

2.5 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget