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BaseInfo

ncRNA ID	novel_zma_miR5800
Species	Zea mays
Class	miRNA
Genome position	Chr7:103273481-103273549 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343
Length	24
Mature sequence(if miRNA)	1 - AGGUUCUUUGCCGAGUGCUAGGUA - 24
Stem-loop(if miRNA)	--     GA      A         C C  GAGA  G   CCUGG  CACUCG CAAAGAACC G CA    GG U   |||||  |||||| ||||||||| | ||    ||   GGAUC  GUGAGC GUUUCUUGG C GU    CC C AU     --      C         A U  ---A  C
Stem-loop sequence	CCUGGGACACUCGACAAAGAACCCGCCAGAGAGGGUCCCCAUGUCAGGUUCUUUGCCGAGUGCUAGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962802.1	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUG-GA   1   ||==||||||||||||||||||-|| targets:1121   UAUUUAGCACUCGGCAAAGAACUCU   1145 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ067174.1	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1   *=*||=|||||||||||||||||| targets:16   GGACUGGCACUCGGCAAAGAACCU   39 Target Full Sequence	1.0	TSA: Zea mays contig02808, mRNA sequence	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   AUGG-AUCGUGAGCCGUUUCUUGGA   1   *=||-|||||||||||||||||||* targets:11   GGCCAUAGCACUCGGCAAAGAACCA   35 Target Full Sequence	1.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   AUGG-AUCGUGAGCCGUUUCUUGGA   1   *=||-|||||||||||||||||||* targets:11   GGCCAUAGCACUCGGCAAAGAACCA   35 Target Full Sequence	1.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   AUGG-AUCGUGAGCCGUUUCUUGGA   1   *=||-|||||||||||||||||||* targets:11   GGCCAUAGCACUCGGCAAAGAACCA   35 Target Full Sequence	1.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1   |*=|*=|||||||||||||||*|| targets:6   UUUCGGGCACUCGGCAAAGAAGCU   29 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1   |*=|*=|||||||||||||||*|| targets:6   UUUCGGGCACUCGGCAAAGAAGCU   29 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1   |*=|*=|||||||||||||||*|| targets:6   UUUCGGGCACUCGGCAAAGAAGCU   29 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1   |*==|*|||||||||||||||*|| targets:1241   UUUUUUGCACUCGGCAAAGAAGCU   1264 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   AUGGAUCGUGAGCCGUUUCUUGGA   1   |*==|*|||||||||||||||*|| targets:1291   UUUUUUGCACUCGGCAAAGAAGCU   1314 Target Full Sequence	2.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget