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BaseInfo

ncRNA ID	osa-miRf10177-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UAACGAGCCAGCUCGGGUCG - NA
Stem-loop(if miRNA)	-GGCU GA               - -    -U UG    CGUU     -AA      UGCUCGGCUCG      G  UAACGAGCCAGCUCG G GUCG  U  AGCU    GUCUU   CGAGCC           G      |  ||||||||||||||| | ||||  |  ||||    |||||   ||||||           C      C  AUUGCUCGGUCGAGC C CAGC  G  UCGA    CGGAA   CGAGCA           U UUGCU AA               G U    UC GU    ---U     AAU      AUUAUAAUUGC
Stem-loop sequence	GGCUGGAUAACGAGCCAGCUCGGGUCGUUUGAGCUCGUUGUCUUAACGAGCCUGCUCGGCUCGGCUCGUUAAUAUUAACGAGCUAAAAGGCUAGCUUGGCUCGACUCGCGAGCUGGCUCGUUAAACUCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK072949.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||||||||||||||||||| targets:2835   CGACCCGAGCUGGCUCGUUA   2854 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023147J15, full insert sequence	NA	coding protein	psRNATarget
AK072949.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||*||||||*||||||||| targets:2799   CGAGCCGAGCAGGCUCGUUA   2818 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023147J15, full insert sequence	NA	coding protein	psRNATarget
CT833603.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||||||||||||||||||| targets:394   CGACCCGAGCUGGCUCGUUA   413 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110C17, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |*=|=||||||||||||||| targets:2551   CAGCUCGAGCUGGCUCGUUA   2570 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
XM_015757797.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||*|||||||*|||||||| targets:559   CGAGCCGAGCUAGCUCGUUA   578 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 1 (LOC4347988), transcript variant X1, mRNA	wall-associated receptor kinase 1(LOC4347988)	coding protein	psRNATarget
XM_015757797.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||*|||||||||||||*|| targets:610   CGAGCCGAGCUGGCUCGAUA   629 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 1 (LOC4347988), transcript variant X1, mRNA	wall-associated receptor kinase 1(LOC4347988)	coding protein	psRNATarget
AK109175.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||*|||||||*|||||||| targets:580   CGAGCCGAGCUAGCUCGUUA   599 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-155-H10, full insert sequence	NA	coding protein	psRNATarget
AK109175.1	ncRNA:20   GCUGGGCUCGACCGAGCAAU   1   |||*|||||||||||||*|| targets:621   CGAGCCGAGCUGGCUCGAUA   640 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-155-H10, full insert sequence	NA	coding protein	psRNATarget