Search result

BaseInfo

ncRNA ID	novel_zma_miR5798
Species	Zea mays
Class	miRNA
Genome position	Chr7:115588800-115588924 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647389;SRR2647467
Length	24
Mature sequence(if miRNA)	102 - ACCGCCACUAGAAAUCAUAUUUCU - 125
Stem-loop(if miRNA)	--                A                                  G  G        ACCGCCACUAGAAAUC UAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCC   |||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||A   UGGCGGUGAUCUUUAG AUAAAGAUGACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGU UU                C                                  G  G
Stem-loop sequence	ACCGCCACUAGAAAUCAUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCAGUAGAAAUCCAUGAUUUGUAGUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUACGAUUUCUAGUGGCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235215.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |||||||||||||||||||*|||| targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96 Target Full Sequence	1.5	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |||||||||||||||||||*|||| targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96 Target Full Sequence	1.5	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |||||||||||||||||||*|||| targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96 Target Full Sequence	1.5	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1   |*||||--|||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96 Target Full Sequence	2.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1   |*||||--|||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96 Target Full Sequence	2.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1   |*||||--|||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96 Target Full Sequence	2.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |*|||*|||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24 Target Full Sequence	1.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |*|||*|||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24 Target Full Sequence	1.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |*|||*|||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24 Target Full Sequence	1.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget