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BaseInfo

ncRNA ID novel_zma_miR5796
Species Zea mays
Class miRNA
Genome position Chr10:123892779-123892912 [+]
Reference genome RefGen_v4
Source SRR1618883;SRR5100255
Length 24
Mature sequence(if miRNA) 1 - UCCUUAAGGGCUGAUUUGGUGACC - 24
Stem-loop(if miRNA) --UC    A   C            -CC        G            A  A      AA     UA
    CUUA GGG UGAUUUGGUGAC   GGGAUCCC GGAGGAUUGGAG GG UUGAGG  GAAAU  G
    |||| ||| ||||||||||||   |||||||| |||||||||||| || ||||||  |||||
    GAAU CCC ACUAAACCACUG   CCCUAGGG CCUCCUAACCUC CC AACUCC  CUUUA  U
CUCU    -   A            UUC        G            C  C      CC     UU
Stem-loop sequence UCCUUAAGGGCUGAUUUGGUGACCCGGGAUCCCGGGAGGAUUGGAGAGGAUUGAGGAAGAAAUUAGUUUAUUUCCCCCUCAACCCCCUCCAAUCCUCCGGGGAUCCCCUUGUCACCAAAUCAACCCUAAGUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU974244.1
ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1
  ||||||||||||||||||||||**
targets:496   GGUCACCAAAUCAGCCCUUAAGCU   519

2.5 Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds NA coding protein psRNATarget
EU948260.1
ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1
  |||||=|||||||||||*||||||
targets:429   GGUCAUCAAAUCAGCCCAUAAGGA   452

2.5 Zea mays clone 371984 mRNA sequence NA coding protein psRNATarget
BT068562.1
ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1
  **|||||||||=|||||||||||*
targets:1083   AAUCACCAAAUUAGCCCUUAAGGU   1106

2.5 Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds NA coding protein psRNATarget
XM_008667073.2
ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1
  ||||||||||*||||||*||||||
targets:3397   GGUCACCAAACCAGCCCAUAAGGA   3420

2.5 PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667075.2
ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1
  ||||||||||*||||||*||||||
targets:3413   GGUCACCAAACCAGCCCAUAAGGA   3436

2.5 PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667074.2
ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1
  ||||||||||*||||||*||||||
targets:3417   GGUCACCAAACCAGCCCAUAAGGA   3440

2.5 PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA NA coding protein psRNATarget