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BaseInfo

ncRNA ID	novel_zma_miR5796
Species	Zea mays
Class	miRNA
Genome position	Chr10:123892779-123892912 [+]
Reference genome	RefGen_v4
Source	SRR1618883;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UCCUUAAGGGCUGAUUUGGUGACC - 24
Stem-loop(if miRNA)	--UC    A   C            -CC        G            A  A      AA     UA     CUUA GGG UGAUUUGGUGAC   GGGAUCCC GGAGGAUUGGAG GG UUGAGG  GAAAU  G     |||| ||| ||||||||||||   |||||||| |||||||||||| || ||||||  |||||     GAAU CCC ACUAAACCACUG   CCCUAGGG CCUCCUAACCUC CC AACUCC  CUUUA  U CUCU    -   A            UUC        G            C  C      CC     UU
Stem-loop sequence	UCCUUAAGGGCUGAUUUGGUGACCCGGGAUCCCGGGAGGAUUGGAGAGGAUUGAGGAAGAAAUUAGUUUAUUUCCCCCUCAACCCCCUCCAAUCCUCCGGGGAUCCCCUUGUCACCAAAUCAACCCUAAGUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974244.1	ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1   ||||||||||||||||||||||** targets:496   GGUCACCAAAUCAGCCCUUAAGCU   519 Target Full Sequence	2.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
EU948260.1	ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1   |||||=|||||||||||*|||||| targets:429   GGUCAUCAAAUCAGCCCAUAAGGA   452 Target Full Sequence	2.5	Zea mays clone 371984 mRNA sequence	NA	coding protein	psRNATarget
BT068562.1	ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1   **|||||||||=|||||||||||* targets:1083   AAUCACCAAAUUAGCCCUUAAGGU   1106 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667073.2	ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1   ||||||||||*||||||*|||||| targets:3397   GGUCACCAAACCAGCCCAUAAGGA   3420 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667075.2	ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1   ||||||||||*||||||*|||||| targets:3413   GGUCACCAAACCAGCCCAUAAGGA   3436 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667074.2	ncRNA:24   CCAGUGGUUUAGUCGGGAAUUCCU   1   ||||||||||*||||||*|||||| targets:3417   GGUCACCAAACCAGCCCAUAAGGA   3440 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA	NA	coding protein	psRNATarget