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BaseInfo

ncRNA ID novel_zma_miR5794
Species Zea mays
Class miRNA
Genome position Chr7:167230390-167230482 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647390
Length 23
Mature sequence(if miRNA) 71 - UGUUCUAUUUUAGUAUAUAAAUU - 93
Stem-loop(if miRNA) --              A      -UUGG            C      
  UGUUCUAUUUUAGU UAUAAA     CAAAUAUAGAAA UAAAAUA
  |||||||||||||| ||||||     |||||||||||| ||||||G
  AUAAGGUAAAAUCA AUGUUU     GUUUAUAUCUUU AUUUUGA
AA              -      UAAUA            A      
Stem-loop sequence UGUUCUAUUUUAGUAUAUAAAUUGGCAAAUAUAGAAACUAAAAUAGAGUUUUAAUUUCUAUAUUUGAUAAUUUUGUAACUAAAAUGGAAUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ060524.1
ncRNA:23   UUAAAUAUAUGAUUUUAUCUUGU   1
  ||||||||*||||||||||||=|
targets:152   AAUUUAUAGACUAAAAUAGAAUA   174

2.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
HI402995.1
ncRNA:23   UUAAAUAUAUGAUUUUAUCUUGU   1
  ||||||||*||||||||||||=|
targets:112   AAUUUAUACACUAAAAUAGAAUA   134

2.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
JB163456.1
ncRNA:23   UUAAAUAUAUGAUUUUAUCUUGU   1
  ||||||||*||||||||||||=|
targets:112   AAUUUAUACACUAAAAUAGAAUA   134

2.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
LQ235125.1
ncRNA:23   UUAAAUAUAUGAUUUUAUCUUGU   1
  ||||||||*||||||||||||=|
targets:112   AAUUUAUACACUAAAAUAGAAUA   134

2.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget