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BaseInfo

ncRNA ID novel_zma_miR5793
Species Zea mays
Class miRNA
Genome position Chr7:179895274-179895360 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647385
Length 24
Mature sequence(if miRNA) 1 - ACCGCCUGUGAUGUAAAAAUCAUA - 24
Stem-loop(if miRNA) --    ACUA              -------  CU       C  A A
  UGAU    UUACAUCACAGGCG       UA  AAACCGC UG G C
  ||||    ||||||||||||||       ||  ||||||| || |
  ACUA    AAUGUAGUGUCCGC       AU  UUUGGCG AC C A
AU    --AA              CAAGCCA  CU       U  A U
Stem-loop sequence UGAUACUAUUACAUCACAGGCGUACUAAACCGCCUGAGACAUCACAUGCGGUUUUCUAACCGAACCGCCUGUGAUGUAAAAAUCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948659.1
ncRNA:24   AUACUAAAAAUGUAGUGUCCGCCA   1
  ||*|*||||||||||||||*||||
targets:672   UACGCUUUUUACAUCACAGACGGU   695

1.5 Zea mays clone 381522 mRNA sequence NA coding protein psRNATarget
NM_001196988.1
ncRNA:24   AUACUAAAAAUGUAGUGUCCGCCA   1
  ||*|*||||||||||||||*||||
targets:2029   UACGCUUUUUACAUCACAGACGGU   2052

1.5 Zea mays hypothetical protein (LOC100502510), mRNA NA coding protein psRNATarget
BT088393.1
ncRNA:24   AUACUAAAAAUGUAGUGUCCGCCA   1
  ||*|*||||||||||||||*||||
targets:2029   UACGCUUUUUACAUCACAGACGGU   2052

1.5 Zea mays full-length cDNA clone ZM_BFc0172I22 mRNA, complete cds NA coding protein psRNATarget