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BaseInfo

ncRNA ID novel_zma_miR5791
Species Zea mays
Class miRNA
Genome position Chr6:151824511-151824617 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647386;SRR2647389;SRR2647390
Length 24
Mature sequence(if miRNA) 84 - UAUAUAUCUAAAGUUGCAAUCUUU - 107
Stem-loop(if miRNA) --AAAUUA                 -------   U     CUCA    C     AGU
        CAACUUUAGAUAUAUAC       CAU GCUAU    CUCC ACAUG   C
        |||||||||||||||||       ||| |||||    |||| |||||   A
        GUUGAAAUCUAUAUAUG       GUA UGAUA    GAGG UGUAC   A
UUUCUAAC                 AUAAUAU   -     -ACC    -     AGU
Stem-loop sequence AAAUUACAACUUUAGAUAUAUACCAUUGCUAUCUCACUCCCACAUGAGUCAAUGACAUGUGGAGCCAAUAGUAUGUAUAAUAGUAUAUAUCUAAAGUUGCAAUCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669273.2
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1135   AAAGAUUGCAACUUUAGAUAUAUA   1158

0.0 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669274.2
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1126   AAAGAUUGCAACUUUAGAUAUAUA   1149

0.0 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X2, mRNA NA coding protein psRNATarget
AY105630.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1100   AAAGAUUGCAACUUUAGAUAUAUA   1123

0.0 Zea mays PCO073836 mRNA sequence NA coding protein psRNATarget
XM_008669275.2
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1108   AAAGAUUGCAACUUUAGAUAUAUA   1131

0.0 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X3, mRNA NA coding protein psRNATarget
BT085518.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1089   AAAGAUUGCAACUUUAGAUAUAUA   1112

0.0 Zea mays full-length cDNA clone ZM_BFc0028K04 mRNA, complete cds NA coding protein psRNATarget
EU965045.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1091   AAAGAUUGCAACUUUAGAUAUAUA   1114

0.0 Zea mays clone 283433 mRNA sequence NA coding protein psRNATarget
BT039634.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1103   AAAGAUUGCAACUUUAGAUAUAUA   1126

0.0 Zea mays full-length cDNA clone ZM_BFc0035I13 mRNA, complete cds NA coding protein psRNATarget
NM_001147320.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1103   AAAGAUUGCAACUUUAGAUAUAUA   1126

0.0 Zea mays Phosphomannomutase (umc2246), mRNA NA coding protein psRNATarget
BT039627.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1097   AAAGAUUGCAACUUUAGAUAUAUA   1120

0.0 Zea mays full-length cDNA clone ZM_BFc0035C20 mRNA, complete cds NA coding protein psRNATarget
BT063220.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||||||||||||||||||
targets:1019   AAAGAUUGCAACUUUAGAUAUAUA   1042

0.0 Zea mays full-length cDNA clone ZM_BFc0039G24 mRNA, complete cds NA coding protein psRNATarget
XM_008656662.2
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  |||||||*||||||||||||||||
targets:2160   AAAGAUUACAACUUUAGAUAUAUA   2183

1.0 PREDICTED: Zea mays protein binding protein (LOC100280668), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549784.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||||||||=|||||||*|||||||
targets:1056   AAAGAUUGUAACUUUAAAUAUAUA   1079

2.5 PREDICTED: Zea mays YLS9 (LOC100284750), transcript variant X1, mRNA NA coding protein psRNATarget
EZ053783.1
ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1
  ||=||||*||||||||*|||||||
targets:85   AAGGAUUACAACUUUAAAUAUAUA   108

2.5 TSA: Zea mays contig54905, mRNA sequence NA coding protein psRNATarget