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BaseInfo

ncRNA ID	novel_zma_miR5791
Species	Zea mays
Class	miRNA
Genome position	Chr6:151824511-151824617 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647386;SRR2647389;SRR2647390
Length	24
Mature sequence(if miRNA)	84 - UAUAUAUCUAAAGUUGCAAUCUUU - 107
Stem-loop(if miRNA)	--AAAUUA                 -------   U     CUCA    C     AGU         CAACUUUAGAUAUAUAC       CAU GCUAU    CUCC ACAUG   C         |||||||||||||||||       ||| |||||    |||| |||||   A         GUUGAAAUCUAUAUAUG       GUA UGAUA    GAGG UGUAC   A UUUCUAAC                 AUAAUAU   -     -ACC    -     AGU
Stem-loop sequence	AAAUUACAACUUUAGAUAUAUACCAUUGCUAUCUCACUCCCACAUGAGUCAAUGACAUGUGGAGCCAAUAGUAUGUAUAAUAGUAUAUAUCUAAAGUUGCAAUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008669273.2	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1135   AAAGAUUGCAACUUUAGAUAUAUA   1158 Target Full Sequence	0.0	PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669274.2	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1126   AAAGAUUGCAACUUUAGAUAUAUA   1149 Target Full Sequence	0.0	PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY105630.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1100   AAAGAUUGCAACUUUAGAUAUAUA   1123 Target Full Sequence	0.0	Zea mays PCO073836 mRNA sequence	NA	coding protein	psRNATarget
XM_008669275.2	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1108   AAAGAUUGCAACUUUAGAUAUAUA   1131 Target Full Sequence	0.0	PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT085518.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1089   AAAGAUUGCAACUUUAGAUAUAUA   1112 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0028K04 mRNA, complete cds	NA	coding protein	psRNATarget
EU965045.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1091   AAAGAUUGCAACUUUAGAUAUAUA   1114 Target Full Sequence	0.0	Zea mays clone 283433 mRNA sequence	NA	coding protein	psRNATarget
BT039634.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1103   AAAGAUUGCAACUUUAGAUAUAUA   1126 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035I13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147320.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1103   AAAGAUUGCAACUUUAGAUAUAUA   1126 Target Full Sequence	0.0	Zea mays Phosphomannomutase (umc2246), mRNA	NA	coding protein	psRNATarget
BT039627.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1097   AAAGAUUGCAACUUUAGAUAUAUA   1120 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035C20 mRNA, complete cds	NA	coding protein	psRNATarget
BT063220.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||||||||||||||||||| targets:1019   AAAGAUUGCAACUUUAGAUAUAUA   1042 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0039G24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656662.2	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   |||||||*|||||||||||||||| targets:2160   AAAGAUUACAACUUUAGAUAUAUA   2183 Target Full Sequence	1.0	PREDICTED: Zea mays protein binding protein (LOC100280668), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549784.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   ||||||||=|||||||*||||||| targets:1056   AAAGAUUGUAACUUUAAAUAUAUA   1079 Target Full Sequence	2.5	PREDICTED: Zea mays YLS9 (LOC100284750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ053783.1	ncRNA:24   UUUCUAACGUUGAAAUCUAUAUAU   1   ||=||||*||||||||*||||||| targets:85   AAGGAUUACAACUUUAAAUAUAUA   108 Target Full Sequence	2.5	TSA: Zea mays contig54905, mRNA sequence	NA	coding protein	psRNATarget