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BaseInfo

ncRNA ID	novel_zma_miR5789
Species	Zea mays
Class	miRNA
Genome position	Chr6:120875078-120875202 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - ACCGCCACUAGAAAUCAUAUUUCU - 24
Stem-loop(if miRNA)	--                A        G                         C  C        ACCGCCACUAGAAAUC UAUUUCUA UGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCA   |||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||U   UGGCGGUGAUCUUUAG AUAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGG UU                C        G                         C  C
Stem-loop sequence	ACCGCCACUAGAAAUCAUAUUUCUAGUGGCGGUUCCUUAAGAAAACCGCCACUACAAAUCAUGGAUUUCUACUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUACGAUUUCUAGUGGCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163546.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |||||||||||||||||||*|||| targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96 Target Full Sequence	1.5	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |||||||||||||||||||*|||| targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96 Target Full Sequence	1.5	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |||||||||||||||||||*|||| targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96 Target Full Sequence	1.5	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1   |*||||--|||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96 Target Full Sequence	2.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1   |*||||--|||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96 Target Full Sequence	2.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1   |*||||--|||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96 Target Full Sequence	2.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |*|||*|||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24 Target Full Sequence	1.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |*|||*|||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24 Target Full Sequence	1.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1   |*|||*|||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24 Target Full Sequence	1.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget