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BaseInfo

ncRNA ID novel_zma_miR5789
Species Zea mays
Class miRNA
Genome position Chr6:120875078-120875202 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - ACCGCCACUAGAAAUCAUAUUUCU - 24
Stem-loop(if miRNA) --                A        G                         C  C     
  ACCGCCACUAGAAAUC UAUUUCUA UGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCA
  |||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||U
  UGGCGGUGAUCUUUAG AUAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGG
UU                C        G                         C  C     
Stem-loop sequence ACCGCCACUAGAAAUCAUAUUUCUAGUGGCGGUUCCUUAAGAAAACCGCCACUACAAAUCAUGGAUUUCUACUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUACGAUUUCUAGUGGCGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163546.1
ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1
  |||||||||||||||||||*||||
targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96

1.5 Sequence 1210 from Patent EP2559767 NA coding protein psRNATarget
HI403085.1
ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1
  |||||||||||||||||||*||||
targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96

1.5 Sequence 1210 from Patent EP2074227 NA coding protein psRNATarget
LQ235215.1
ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1
  |||||||||||||||||||*||||
targets:73   AGAAAUAUGAUUUCUAGUGUCGGU   96

1.5 Sequence 1210 from Patent EP2985353 NA coding protein psRNATarget
HI402984.1
ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1
  |*||||--||||||||||||||||||
targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96

2.5 Sequence 1109 from Patent EP2074227 NA coding protein psRNATarget
JB163445.1
ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1
  |*||||--||||||||||||||||||
targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96

2.5 Sequence 1109 from Patent EP2559767 NA coding protein psRNATarget
LQ235114.1
ncRNA:24   UCUUUA--UACUAAAGAUCACCGCCA   1
  |*||||--||||||||||||||||||
targets:71   AAAAAUCCAUGAUUUCUAGUGGCGGU   96

2.5 Sequence 1109 from Patent EP2985353 NA coding protein psRNATarget
HI403012.1
ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1
  |*|||*||||||||||||||||||
targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24

1.0 Sequence 1137 from Patent EP2074227 NA coding protein psRNATarget
JB163473.1
ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1
  |*|||*||||||||||||||||||
targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24

1.0 Sequence 1137 from Patent EP2559767 NA coding protein psRNATarget
LQ235142.1
ncRNA:24   UCUUUAUACUAAAGAUCACCGCCA   1
  |*|||*||||||||||||||||||
targets:1   AUAAAAAUGAUUUCUAGUGGCGGU   24

1.0 Sequence 1137 from Patent EP2985353 NA coding protein psRNATarget