ncRNA ID | novel_zma_miR5787 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:91296217-91296362 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACAUUUUGGGCUAGUUUGGAUCCA - 24 |
Stem-loop(if miRNA) |
--ACA      -            C   ----GAG         A  A   A  -G A     A AG  AU   CU      UUUUGG GCUAGUUUGGAU CAU       UUUUUAUGG GA UGG GG  A UUGAG G  AA  GGA  A      |||||| |||||||||||| |||       ||||||||| || ||| ||  | ||||| |  ||  |||  A      AAAAUC CGAUCAAACCUA GUG       AGAGAUACC CU ACC CC  U GACUC C  UU  CCU  U UGUUG      U            U   AUUAAUA         A  A   -  GA A     C GG  CC   UU |
Stem-loop sequence | ACAUUUUGGGCUAGUUUGGAUCCAUGAGUUUUUAUGGAGAAUGGAGGGAAUUGAGAGAGAAAUGGACUAAUUUUCCCCUUGGCCCUCAGAUAGCCCCAAUCACCAUAGAGAAUAAUUAGUGUAUCCAAACUAGCUCUAAAAGUUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020551222.1 |
|
1.5 | PREDICTED: Zea mays DNA-directed RNA polymerase V subunit 1-like (LOC103649547), mRNA | NA | coding protein | psRNATarget |