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BaseInfo

ncRNA ID novel_zma_miR5787
Species Zea mays
Class miRNA
Genome position Chr6:91296217-91296362 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - ACAUUUUGGGCUAGUUUGGAUCCA - 24
Stem-loop(if miRNA) --ACA      -            C   ----GAG         A  A   A  -G A     A AG  AU   CU
     UUUUGG GCUAGUUUGGAU CAU       UUUUUAUGG GA UGG GG  A UUGAG G  AA  GGA  A
     |||||| |||||||||||| |||       ||||||||| || ||| ||  | ||||| |  ||  |||  A
     AAAAUC CGAUCAAACCUA GUG       AGAGAUACC CU ACC CC  U GACUC C  UU  CCU  U
UGUUG      U            U   AUUAAUA         A  A   -  GA A     C GG  CC   UU
Stem-loop sequence ACAUUUUGGGCUAGUUUGGAUCCAUGAGUUUUUAUGGAGAAUGGAGGGAAUUGAGAGAGAAAUGGACUAAUUUUCCCCUUGGCCCUCAGAUAGCCCCAAUCACCAUAGAGAAUAAUUAGUGUAUCCAAACUAGCUCUAAAAGUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551222.1
ncRNA:24   ACCUAGGUUUGAUCGGGUUUUACA   1
  |||**||||||||||*||||||||
targets:2517   UGGUCCCAAACUAGCGCAAAAUGU   2540

1.5 PREDICTED: Zea mays DNA-directed RNA polymerase V subunit 1-like (LOC103649547), mRNA NA coding protein psRNATarget