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BaseInfo

ncRNA ID	novel_zma_miR5786
Species	Zea mays
Class	miRNA
Genome position	Chr6:82990410-82990461 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647388
Length	24
Mature sequence(if miRNA)	29 - GACUAGGAAGAGAUUUAAUCCCCU - 52
Stem-loop(if miRNA)	--           CC     AUACAA   GGGAUUAAAUC  CUUCU      U   |||||||||||  |||||      U   CCCUAAUUUAG  GAAGG      U UC           -A     AUCAGU
Stem-loop sequence	GGGAUUAAAUCCCCUUCUAUACAAUUUUGACUAGGAAGAGAUUUAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670947.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   |||||||||||||*|||||||||| targets:604   AGGGGAUUAAAUCCCUUCCUAGUC   627 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   |||*|||||||||||||||||||| targets:1009   AGGAGAUUAAAUCUCUUCCUAGUC   1032 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   UCC-CCUAAUUUAGAGAAGGAUCAG   1   |||-||||||||||||||||||*|| targets:2992   AGGAGGAUUAAAUCUCUUCCUAUUC   3016 Target Full Sequence	1.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   UCC-CCUAAUUUAGAGAAGGAUCAG   1   |||-||||||||||||||||||*|| targets:2997   AGGAGGAUUAAAUCUCUUCCUAUUC   3021 Target Full Sequence	1.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111895.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   ||*||||||||||||||*|||||| targets:213   AGAGGAUUAAAUCUCUUGCUAGUC   236 Target Full Sequence	1.5	Zea mays CL41465_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020546127.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   ||*||||||||||||||||||*|| targets:1788   AGAGGAUUAAAUCUCUUCCUAUUC   1811 Target Full Sequence	1.5	PREDICTED: Zea mays myb-related protein 330 (LOC103642827), mRNA	NA	coding protein	psRNATarget
EU950695.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   |*|||||||||||*|||||||||= targets:610   AAGGGAUUAAAUCCCUUCCUAGUU   633 Target Full Sequence	2.5	Zea mays clone 509921 mRNA sequence	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   =*|||||*|||||||||=|||||| targets:149   GAGGGAUCAAAUCUCUUUCUAGUC   172 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   =*|||||*|||||||||=|||||| targets:149   GAGGGAUCAAAUCUCUUUCUAGUC   172 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   =*|||||*|||||||||=|||||| targets:149   GAGGGAUCAAAUCUCUUUCUAGUC   172 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   =*|||||*|||||||||=|||||| targets:149   GAGGGAUCAAAUCUCUUUCUAGUC   172 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   =*|||||*|||||||||=|||||| targets:149   GAGGGAUCAAAUCUCUUUCUAGUC   172 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   =*|||||*|||||||||=|||||| targets:149   GAGGGAUCAAAUCUCUUUCUAGUC   172 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
EU947542.1	ncRNA:24   UCCCCUAAUUUAGAGAAGGAUCAG   1   |||**||||||||||||*|||||| targets:596   AGGAAAUUAAAUCUCUUGCUAGUC   619 Target Full Sequence	1.5	Zea mays clone 346776 mRNA sequence	NA	coding protein	psRNATarget