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BaseInfo

ncRNA ID	novel_zma_miR5780
Species	Zea mays
Class	miRNA
Genome position	Chr6:34463238-34463349 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - CCAUAGUCUAUGGCGCCGAGCUGU - 24
Stem-loop(if miRNA)	--            -   U         C   CUCG    CA   A     -C   A   AGCUCGGCGCCA AGA CUAUGGCGC GAG    GUGC  CGU GGCGC  ACG C   |||||||||||| ||| ||||||||| |||    ||||  ||| |||||  ||| G   UCGAGCCGCGGU UCU GAUACCGCG CUC    CACG  GCG CCGUG  UGC U UG            A   -         A   CAUG    AC   A     UU   C
Stem-loop sequence	AGCUCGGCGCCAAGAUCUAUGGCGCCGAGCUCGGUGCCACGUAGGCGCCACGACGUCCGUUUGUGCCAGCGCAGCACGUACCUCAGCGCCAUAGUCUAUGGCGCCGAGCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402936.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53 Target Full Sequence	1.5	Sequence 1061 from Patent EP2074227	NA	coding protein	psRNATarget
JB163397.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53 Target Full Sequence	1.5	Sequence 1061 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235066.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53 Target Full Sequence	1.5	Sequence 1061 from Patent EP2985353	NA	coding protein	psRNATarget
BT034188.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:678   ACAGCUCGGCGCCAUAGGCUAUGG   701 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
BT034188.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   *=*||||||||||||||=|||||| targets:642   UUUGCUCGGCGCCAUAGGCUAUGG   665 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:678   ACAGCUCGGCGCCAUAGGCUAUGG   701 Target Full Sequence	1.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   *=*||||||||||||||=|||||| targets:642   UUUGCUCGGCGCCAUAGGCUAUGG   665 Target Full Sequence	1.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:40   ACAGCUCGGCGCCAUAGGCUAUGG   63 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   =||*|||||||||||||*|||||| targets:1302   GCACCUCGGCGCCAUAGCCUAUGG   1325 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:38   ACAGCUCGGCGCCAUAGGCUAUGG   61 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   =||*|||||||||||||*|||||| targets:1300   GCACCUCGGCGCCAUAGCCUAUGG   1323 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:98   ACAGCUCGGCGCCAUAGGCUAUGG   121 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   =||*|||||||||||||*|||||| targets:1359   GCACCUCGGCGCCAUAGCCUAUGG   1382 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   |||||||||||||||||=|||||| targets:98   ACAGCUCGGCGCCAUAGGCUAUGG   121 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   =||*|||||||||||||*|||||| targets:1359   GCACCUCGGCGCCAUAGCCUAUGG   1382 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   ==|*|||||||||||||*|||||| targets:862   GUACCUCGGCGCCAUAGCCUAUGG   885 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1   ||=--||||||||||||=|||||* targets:900   ACG--UCGGCGCCAUAGGCUAUGA   921 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget