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BaseInfo

ncRNA ID novel_zma_miR5780
Species Zea mays
Class miRNA
Genome position Chr6:34463238-34463349 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - CCAUAGUCUAUGGCGCCGAGCUGU - 24
Stem-loop(if miRNA) --            -   U         C   CUCG    CA   A     -C   A
  AGCUCGGCGCCA AGA CUAUGGCGC GAG    GUGC  CGU GGCGC  ACG C
  |||||||||||| ||| ||||||||| |||    ||||  ||| |||||  ||| G
  UCGAGCCGCGGU UCU GAUACCGCG CUC    CACG  GCG CCGUG  UGC U
UG            A   -         A   CAUG    AC   A     UU   C
Stem-loop sequence AGCUCGGCGCCAAGAUCUAUGGCGCCGAGCUCGGUGCCACGUAGGCGCCACGACGUCCGUUUGUGCCAGCGCAGCACGUACCUCAGCGCCAUAGUCUAUGGCGCCGAGCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402936.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53

1.5 Sequence 1061 from Patent EP2074227 NA coding protein psRNATarget
JB163397.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53

1.5 Sequence 1061 from Patent EP2559767 NA coding protein psRNATarget
LQ235066.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:30   ACAGCUCGGCGCCAUAGGCUAUGG   53

1.5 Sequence 1061 from Patent EP2985353 NA coding protein psRNATarget
BT034188.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:678   ACAGCUCGGCGCCAUAGGCUAUGG   701

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
BT034188.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  *=*||||||||||||||=||||||
targets:642   UUUGCUCGGCGCCAUAGGCUAUGG   665

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:678   ACAGCUCGGCGCCAUAGGCUAUGG   701

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  *=*||||||||||||||=||||||
targets:642   UUUGCUCGGCGCCAUAGGCUAUGG   665

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:40   ACAGCUCGGCGCCAUAGGCUAUGG   63

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  =||*|||||||||||||*||||||
targets:1302   GCACCUCGGCGCCAUAGCCUAUGG   1325

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:38   ACAGCUCGGCGCCAUAGGCUAUGG   61

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  =||*|||||||||||||*||||||
targets:1300   GCACCUCGGCGCCAUAGCCUAUGG   1323

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:98   ACAGCUCGGCGCCAUAGGCUAUGG   121

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  =||*|||||||||||||*||||||
targets:1359   GCACCUCGGCGCCAUAGCCUAUGG   1382

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  |||||||||||||||||=||||||
targets:98   ACAGCUCGGCGCCAUAGGCUAUGG   121

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  =||*|||||||||||||*||||||
targets:1359   GCACCUCGGCGCCAUAGCCUAUGG   1382

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  ==|*|||||||||||||*||||||
targets:862   GUACCUCGGCGCCAUAGCCUAUGG   885

1.5 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UGUCGAGCCGCGGUAUCUGAUACC   1
  ||=--||||||||||||=|||||*
targets:900   ACG--UCGGCGCCAUAGGCUAUGA   921

2.5 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget