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BaseInfo

ncRNA ID	novel_zma_miR5779
Species	Zea mays
Class	miRNA
Genome position	Chr6:36912273-36912474 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - CGGUUAUUCCUGUCGCAUAUGGAU - 24
Stem-loop(if miRNA)	--            UC                             AUAU      U                                            A   CGGUUAUUCCUG  GCAUAUGGAUUGGAUGGGAUUGGAAAAAA    GAAGGA UUUGACUUGUUUGGGAUUUAAACCCAUCCAAUCCCACUCAAUCC U   ||||||||||||  |||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||||||||   GCCAAUAAGGGU  UGUGUACCUAACCUACUCUAACCUUUUUU    CUUCUU AAACUGAAUAAACCCUAAGUUUGGGUAGGUUAGGGUGAGUUAGG G AA            UA                             AACU      C                                            U
Stem-loop sequence	CGGUUAUUCCUGUCGCAUAUGGAUUGGAUGGGAUUGGAAAAAAAUAUGAAGGAUUUUGACUUGUUUGGGAUUUAAACCCAUCCAAUCCCACUCAAUCCAUGUGGAUUGAGUGGGAUUGGAUGGGUUUGAAUCCCAAAUAAGUCAAACUUCUUCUCAAUUUUUUCCAAUCUCAUCCAAUCCAUGUGUAUUGGGAAUAACCGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008665323.2	ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1   |||||||||=||=||||||||||| targets:1191   AUCCAUAUGUGAUAGGAAUAACCG   1214 Target Full Sequence	2.5	PREDICTED: Zea mays myb-related protein Zm1-like (LOC103642011), mRNA	NA	coding protein	psRNATarget
BT083591.1	ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1   |||||*|||*|||||||||||||| targets:1196   AUCCACAUGGGACAGGAAUAACCG   1219 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158639.1	ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1   |||||*|||*|||||||||||||| targets:1300   AUCCACAUGGGACAGGAAUAACCG   1323 Target Full Sequence	2.0	Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA	NA	coding protein	psRNATarget
EU973712.1	ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1   |||||*|||*|||||||||||||| targets:1300   AUCCACAUGGGACAGGAAUAACCG   1323 Target Full Sequence	2.0	Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds	NA	coding protein	psRNATarget