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BaseInfo

ncRNA ID novel_zma_miR5779
Species Zea mays
Class miRNA
Genome position Chr6:36912273-36912474 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - CGGUUAUUCCUGUCGCAUAUGGAU - 24
Stem-loop(if miRNA) --            UC                             AUAU      U                                            A
  CGGUUAUUCCUG  GCAUAUGGAUUGGAUGGGAUUGGAAAAAA    GAAGGA UUUGACUUGUUUGGGAUUUAAACCCAUCCAAUCCCACUCAAUCC U
  ||||||||||||  |||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||||||||
  GCCAAUAAGGGU  UGUGUACCUAACCUACUCUAACCUUUUUU    CUUCUU AAACUGAAUAAACCCUAAGUUUGGGUAGGUUAGGGUGAGUUAGG G
AA            UA                             AACU      C                                            U
Stem-loop sequence CGGUUAUUCCUGUCGCAUAUGGAUUGGAUGGGAUUGGAAAAAAAUAUGAAGGAUUUUGACUUGUUUGGGAUUUAAACCCAUCCAAUCCCACUCAAUCCAUGUGGAUUGAGUGGGAUUGGAUGGGUUUGAAUCCCAAAUAAGUCAAACUUCUUCUCAAUUUUUUCCAAUCUCAUCCAAUCCAUGUGUAUUGGGAAUAACCGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008665323.2
ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1
  |||||||||=||=|||||||||||
targets:1191   AUCCAUAUGUGAUAGGAAUAACCG   1214

2.5 PREDICTED: Zea mays myb-related protein Zm1-like (LOC103642011), mRNA NA coding protein psRNATarget
BT083591.1
ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1
  |||||*|||*||||||||||||||
targets:1196   AUCCACAUGGGACAGGAAUAACCG   1219

2.0 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1
  |||||*|||*||||||||||||||
targets:1300   AUCCACAUGGGACAGGAAUAACCG   1323

2.0 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
EU973712.1
ncRNA:24   UAGGUAUACGCUGUCCUUAUUGGC   1
  |||||*|||*||||||||||||||
targets:1300   AUCCACAUGGGACAGGAAUAACCG   1323

2.0 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget