ncRNA ID | novel_zma_miR5779 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:36912273-36912474 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CGGUUAUUCCUGUCGCAUAUGGAU - 24 |
Stem-loop(if miRNA) |
--            UC                             AUAU      U                                            A   CGGUUAUUCCUG  GCAUAUGGAUUGGAUGGGAUUGGAAAAAA    GAAGGA UUUGACUUGUUUGGGAUUUAAACCCAUCCAAUCCCACUCAAUCC U   ||||||||||||  |||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||||||||   GCCAAUAAGGGU  UGUGUACCUAACCUACUCUAACCUUUUUU    CUUCUU AAACUGAAUAAACCCUAAGUUUGGGUAGGUUAGGGUGAGUUAGG G AA            UA                             AACU      C                                            U |
Stem-loop sequence | CGGUUAUUCCUGUCGCAUAUGGAUUGGAUGGGAUUGGAAAAAAAUAUGAAGGAUUUUGACUUGUUUGGGAUUUAAACCCAUCCAAUCCCACUCAAUCCAUGUGGAUUGAGUGGGAUUGGAUGGGUUUGAAUCCCAAAUAAGUCAAACUUCUUCUCAAUUUUUUCCAAUCUCAUCCAAUCCAUGUGUAUUGGGAAUAACCGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008665323.2 |
|
2.5 | PREDICTED: Zea mays myb-related protein Zm1-like (LOC103642011), mRNA | NA | coding protein | psRNATarget | |||||||||
BT083591.1 |
|
2.0 | Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
NM_001158639.1 |
|
2.0 | Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA | NA | coding protein | psRNATarget | |||||||||
EU973712.1 |
|
2.0 | Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds | NA | coding protein | psRNATarget |