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BaseInfo

ncRNA ID novel_zma_miR5778
Species Zea mays
Class miRNA
Genome position Chr10:143566134-143566321 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647343;SRR2647388;SRR1583942
Length 24
Mature sequence(if miRNA) 165 - GAUGAUUUAAUAUGUGCACCAUAU - 188
Stem-loop(if miRNA) --                                                      -AUUAUUCAA     A  UA          C  CUACA
  AUGGUGCACAUAUUAAAUUAUCACCACUUAUUUUAGAUUUAACGUCUCUAGUUG          UUUAC AA  ACACCUUUCA CA     C
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||  |||||||||| ||     A
  UACCACGUGUAUAAUUUAGUAGUGGUGAGUAAAAUCUAGAUUGCAGAGAUCAAC          AAAUG UU  UGUGGGAAGU GU     U
UA                                                      AAACCAUAUA     A  CC          U  ACCAC
Stem-loop sequence AUGGUGCACAUAUUAAAUUAUCACCACUUAUUUUAGAUUUAACGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUUCACCACUACACAUCACCAUGUUGAAGGGUGUCCUUAGUAAAAUAUACCAAACAACUAGAGACGUUAGAUCUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548525.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  ||||||||||||||||||||||||
targets:9   AUAUGGUGCACAUAUUAAAUCAUC   32

0.0 PREDICTED: Zea mays uncharacterized LOC109944060 (LOC109944060), mRNA NA coding protein psRNATarget
BT061436.2
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  ||||||||||||||||||||||||
targets:149   AUAUGGUGCACAUAUUAAAUCAUC   172

0.0 Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds NA coding protein psRNATarget
HI405990.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  ||||||||||||||||||||||||
targets:7   AUAUGGUGCACAUAUUAAAUCAUC   30

0.0 Sequence 4115 from Patent EP2074227 NA coding protein psRNATarget
LQ238120.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  ||||||||||||||||||||||||
targets:7   AUAUGGUGCACAUAUUAAAUCAUC   30

0.0 Sequence 4115 from Patent EP2985353 NA coding protein psRNATarget
JB166451.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  ||||||||||||||||||||||||
targets:7   AUAUGGUGCACAUAUUAAAUCAUC   30

0.0 Sequence 4115 from Patent EP2559767 NA coding protein psRNATarget
EU964085.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  ||||||||||||||||||||=|||
targets:1389   AUAUGGUGCACAUAUUAAAUUAUC   1412

1.5 Zea mays clone 275778 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008664116.2
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||||||||||||||
targets:653   ACAUGGUGCACAUAUUAAAUCAUC   676

0.0 PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA NA coding protein psRNATarget
EU971585.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||||||||||||||
targets:733   ACAUGGUGCACAUAUUAAAUCAUC   756

0.0 Zea mays clone 367572 DNA-binding WRKY mRNA, complete cds NA coding protein psRNATarget
NM_001158187.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||||||||||||||
targets:733   ACAUGGUGCACAUAUUAAAUCAUC   756

0.0 Zea mays DNA-binding WRKY (LOC100285294), mRNA NA coding protein psRNATarget
EU950091.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||||||||||||||
targets:431   ACAUGGUGCACAUAUUAAAUCAUC   454

0.0 Zea mays clone 460911 mRNA sequence NA coding protein psRNATarget
EU950356.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||||||||||||||
targets:432   ACAUGGUGCACAUAUUAAAUCAUC   455

0.0 Zea mays clone 490104 mRNA sequence NA coding protein psRNATarget
JB163879.1
ncRNA:23   AUACCACGUGUAUAAUUUAGUAG   1
  *||||||||||||||||||||||
targets:1   CAUGGUGCACAUAUUAAAUCAUC   23

0.0 Sequence 1543 from Patent EP2559767 NA coding protein psRNATarget
LQ235548.1
ncRNA:23   AUACCACGUGUAUAAUUUAGUAG   1
  *||||||||||||||||||||||
targets:1   CAUGGUGCACAUAUUAAAUCAUC   23

0.0 Sequence 1543 from Patent EP2985353 NA coding protein psRNATarget
HI403418.1
ncRNA:23   AUACCACGUGUAUAAUUUAGUAG   1
  *||||||||||||||||||||||
targets:1   CAUGGUGCACAUAUUAAAUCAUC   23

0.0 Sequence 1543 from Patent EP2074227 NA coding protein psRNATarget
BT087210.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||||||
targets:315   ACAUGGUGCAUAUAUUAAAUCAUC   338

1.0 Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds NA coding protein psRNATarget
XM_008681116.2
ncRNA:24   UAUA--CCAC-GUGUAUAAUUUAGUAG   1
  ||||--||||-||||||||||||||||
targets:3110   AUAUCUGGUGUCACAUAUUAAAUCAUC   3136

2.0 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552764.1
ncRNA:24   UAUA--CCAC-GUGUAUAAUUUAGUAG   1
  ||||--||||-||||||||||||||||
targets:2932   AUAUCUGGUGUCACAUAUUAAAUCAUC   2958

2.0 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008679080.2
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||=|||
targets:2000   ACAUGGUGCAUAUAUUAAAUUAUC   2023

2.5 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679083.2
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||=|||
targets:1991   ACAUGGUGCAUAUAUUAAAUUAUC   2014

2.5 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA NA coding protein psRNATarget
BT018927.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||=|||
targets:1023   ACAUGGUGCAUAUAUUAAAUUAUC   1046

2.5 Zea mays clone Contig55.F mRNA sequence NA coding protein psRNATarget
BT087938.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||=|||
targets:843   ACAUGGUGCAUAUAUUAAAUUAUC   866

2.5 Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds NA coding protein psRNATarget
BT037068.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||=|||
targets:878   ACAUGGUGCAUAUAUUAAAUUAUC   901

2.5 Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds NA coding protein psRNATarget
XM_020537789.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||*|||||||||||
targets:33   ACAUGGUGCACACAUUAAAUCAUC   56

1.5 PREDICTED: Zea mays Glycine-rich RNA-binding protein RZ1C (pco145034), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646350.2
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||||||||||||||*|
targets:1584   ACAUGGUGCACAUAUUAAAUCACC   1607

1.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA NA coding protein psRNATarget
LQ235128.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*|||*||||||||||||||||||
targets:41   ACAUGAUGCACAUAUUAAAUCAUC   64

1.0 Sequence 1123 from Patent EP2985353 NA coding protein psRNATarget
HI402998.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*|||*||||||||||||||||||
targets:41   ACAUGAUGCACAUAUUAAAUCAUC   64

1.0 Sequence 1123 from Patent EP2074227 NA coding protein psRNATarget
JB163459.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*|||*||||||||||||||||||
targets:41   ACAUGAUGCACAUAUUAAAUCAUC   64

1.0 Sequence 1123 from Patent EP2559767 NA coding protein psRNATarget
EU961826.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||||*|
targets:1021   ACAUGGUGCAUAUAUUAAAUCAGC   1044

2.5 Zea mays clone 238435 mRNA sequence NA coding protein psRNATarget
LQ238172.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||||*|
targets:7   ACAUGGUGCAUAUAUUAAAUCAGC   30

2.5 Sequence 4167 from Patent EP2985353 NA coding protein psRNATarget
JB166503.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||||*|
targets:7   ACAUGGUGCAUAUAUUAAAUCAGC   30

2.5 Sequence 4167 from Patent EP2559767 NA coding protein psRNATarget
HI406042.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*||||||||=|||||||||||*|
targets:7   ACAUGGUGCAUAUAUUAAAUCAGC   30

2.5 Sequence 4167 from Patent EP2074227 NA coding protein psRNATarget
BT016456.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  |*|||*||||||*|||||||||||
targets:18   ACAUGAUGCACACAUUAAAUCAUC   41

2.5 Zea mays clone Contig289 mRNA sequence NA coding protein psRNATarget
EU948462.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  **||**||||=|||||||||||||
targets:412   MCAUUAUGCAUAUAUUAAAUCAUC   435

2.0 Zea mays clone 377988 mRNA sequence NA coding protein psRNATarget
EZ091174.1
ncRNA:24   UAUACCACGUGUAUAAUUUAGUAG   1
  *|*||*||||=||||||||||||*
targets:1   CUUUGAUGCAUAUAUUAAAUCAUG   24

3.0 TSA: Zea mays contig26821, mRNA sequence NA coding protein psRNATarget
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