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BaseInfo

ncRNA ID novel_zma_miR5774
Species Zea mays
Class miRNA
Genome position Chr5:38609515-38609576 [-]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 39 - AAUUUUACGAAGAACCCCUCCCAC - 62
Stem-loop(if miRNA) --      AC           C     AGGG
  AAUUUU  GAAGAACCCCU CCACC    A
  ||||||  ||||||||||| |||||
  UUAAAA  CUUCUUGGGGA GGUGG    A
GG      CA           A     AAGG
Stem-loop sequence AAUUUUACGAAGAACCCCUCCCACCAGGGAAGGAAGGUGGAAGGGGUUCUUCACAAAAUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064809.1
ncRNA:24   CACCCUCCCCAAGAAGCAUUUUAA   1
  |*|||||||||||||=||||||||
targets:1012   GAGGGAGGGGUUCUUUGUAAAAUU   1035

1.5 Zea mays full-length cDNA clone ZM_BFb0167E07 mRNA, complete cds NA coding protein psRNATarget
XM_020538815.1
ncRNA:24   CACCCUCCCCAAGAAGCAUUUUAA   1
  |*|||||||||||||=||||||||
targets:1042   GAGGGAGGGGUUCUUUGUAAAAUU   1065

1.5 PREDICTED: Zea mays Ribosome-recycling factor chloroplastic (LOC100217177), transcript variant X1, mRNA NA coding protein psRNATarget
EU957184.1
ncRNA:24   CACCCUCCCCAAGAAGCAUUUUAA   1
  |*|||||||||||||=||||||||
targets:2087   GGGGGAGGGGUUCUUUGUAAAAUU   2110

1.5 Zea mays clone 1585268 cytochrome c1, heme protein mRNA, complete cds NA coding protein psRNATarget
XM_008661793.2
ncRNA:24   CACCCUCCCCAAGAAGCAUUUUAA   1
  |||**||||||||||=||||||||
targets:995   GUGAAAGGGGUUCUUUGUAAAAUU   1018

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661794.2
ncRNA:24   CACCCUCCCCAAGAAGCAUUUUAA   1
  |||**||||||||||=||||||||
targets:1004   GUGAAAGGGGUUCUUUGUAAAAUU   1027

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA NA coding protein psRNATarget
EZ074109.1
ncRNA:24   CACCCUCCCCAAGAAGCAUUUUAA   1
  |*|*||*||||||||||||*||||
targets:83   GAGCGACGGGUUCUUCGUACAAUU   106

2.5 TSA: Zea mays contig09746, mRNA sequence NA coding protein psRNATarget
EZ081922.1
ncRNA:20   CUCCCCAAGAAGCAUUUUAA   1
  **||||||||||*|||||||
targets:1   UCGGGGUUCUUCAUAAAAUU   20

2.5 TSA: Zea mays contig17564, mRNA sequence NA coding protein psRNATarget