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BaseInfo

ncRNA ID	novel_zma_miR5769
Species	Zea mays
Class	miRNA
Genome position	Chr6:158517565-158517661 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647385;SRR2647386;SRR2647387;SRR2647389;SRR2647467
Length	24
Mature sequence(if miRNA)	74 - AUUGAUCUCAAUCCAUAUGUGUUG - 97
Stem-loop(if miRNA)	--       U                U         AU      A      AUUGAUC CAAUCCAUAUGUGUUG GGUGGAUUA  GUAUAA UUAA   ||||||| |||||||||||||||| |||||||||  |||||| |||U   UAACUGG GUUAGGUGUACAUAAC CCACCUAAU  UAUAUU AAUU CA       U                U         CC      A
Stem-loop sequence	AUUGAUCUCAAUCCAUAUGUGUUGUGGUGGAUUAAUGUAUAAAUUAAUUUAAAUUAUAUCCUAAUCCACCUCAAUACAUGUGGAUUGUGGUCAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084723.2	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||||||||||| targets:162   CAACACAUGUGGAUUGAGAUCAAU   185 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0166K06 mRNA, complete cds	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:113   CAACACAUGUGGAUUGAGGUCAAU   136 Target Full Sequence	2.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||*|||||||| targets:56   CAACACAUGUGGAUUAAGAUCAAU   79 Target Full Sequence	2.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:113   CAACACAUGUGGAUUGAGGUCAAU   136 Target Full Sequence	2.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||*|||||||| targets:56   CAACACAUGUGGAUUAAGAUCAAU   79 Target Full Sequence	2.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:113   CAACACAUGUGGAUUGAGGUCAAU   136 Target Full Sequence	2.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||*|||||||| targets:56   CAACACAUGUGGAUUAAGAUCAAU   79 Target Full Sequence	2.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:76   CAACACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:76   CAACACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=|||||||||=||||| targets:76   CAACACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
HI403277.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123 Target Full Sequence	2.5	Sequence 1402 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235407.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123 Target Full Sequence	2.5	Sequence 1402 from Patent EP2985353	NA	coding protein	psRNATarget
JB163738.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123 Target Full Sequence	2.5	Sequence 1402 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115 Target Full Sequence	2.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115 Target Full Sequence	2.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115 Target Full Sequence	2.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
HI403376.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
JB163837.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	2.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:69   CAAUACAUGUGGAUUGAGGUCAAU   92 Target Full Sequence	2.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100 Target Full Sequence	2.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
HI403075.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100 Target Full Sequence	2.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
JB163536.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100 Target Full Sequence	2.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
HI403051.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1176 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235181.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1176 from Patent EP2985353	NA	coding protein	psRNATarget
JB163512.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1176 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
HI402966.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	2.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
EU961632.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||||||||||||*||||| targets:1820   CAAUACAUAUGGAUUGAGCUCAAU   1843 Target Full Sequence	1.5	Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds	NA	coding protein	psRNATarget
EU960123.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||*|||||||||=||||| targets:1570   CAACACAUUUGGAUUGAGGUCAAU   1593 Target Full Sequence	2.5	Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds	NA	coding protein	psRNATarget
BT019026.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||*|||||||||=||||| targets:944   CAACACAUUUGGAUUGAGGUCAAU   967 Target Full Sequence	2.5	Zea mays clone Contig531.F mRNA sequence	NA	coding protein	psRNATarget
EU944570.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||*|||||||||=||||| targets:723   CAACACAUUUGGAUUGAGGUCAAU   746 Target Full Sequence	2.5	Zea mays clone 222723 mRNA sequence	NA	coding protein	psRNATarget
EZ111052.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||*|||=||||||||||||||| targets:192   CAACUCAUGUGGAUUGAGAUCAAU   215 Target Full Sequence	1.0	TSA: Zea mays contig46713, mRNA sequence	NA	coding protein	psRNATarget
EZ516950.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||*|||=||||||||||||||| targets:58   CAACUCAUGUGGAUUGAGAUCAAU   81 Target Full Sequence	1.0	TSA: Zea mays cultivar W22 CL342Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
JB167406.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||||||*|||| targets:59   CAACACAUGUGGAUUGAGACCAAU   82 Target Full Sequence	2.5	Sequence 5070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239075.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||||||*|||| targets:59   CAACACAUGUGGAUUGAGACCAAU   82 Target Full Sequence	2.5	Sequence 5070 from Patent EP2985353	NA	coding protein	psRNATarget
HI406945.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||||||||=||||||||||*|||| targets:59   CAACACAUGUGGAUUGAGACCAAU   82 Target Full Sequence	2.5	Sequence 5070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|*||||||||||||| targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99 Target Full Sequence	2.0	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|*||||||||||||| targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99 Target Full Sequence	2.0	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   |||=||||=|*||||||||||||| targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99 Target Full Sequence	2.0	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008669126.2	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||==||||||*|||||||*||||| targets:1887   CAGUACAUAUAGAUUGAGCUCAAU   1910 Target Full Sequence	2.5	PREDICTED: Zea mays Ferrochelatase (pco095974), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143237.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||==||||||*|||||||*||||| targets:1848   CAGUACAUAUAGAUUGAGCUCAAU   1871 Target Full Sequence	2.5	Zea mays Ferrochelatase (pco095974), mRNA	NA	coding protein	psRNATarget
BT037441.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||==||||||*|||||||*||||| targets:1848   CAGUACAUAUAGAUUGAGCUCAAU   1871 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0169H11 mRNA, complete cds	NA	coding protein	psRNATarget
BT038657.1	ncRNA:24   GUUGUGUAUACCUAACUCUAGUUA   1   ||==||||||*|||||||*||||| targets:1786   CAGUACAUAUAGAUUGAGCUCAAU   1809 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0304H12 mRNA, complete cds	NA	coding protein	psRNATarget