ncRNA ID | novel_zma_miR5768 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:157406881-157406979 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647221 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUUAUACUCAUCCUUUGUGUG - 21 |
Stem-loop(if miRNA) |
--U       C      U        U  AAU   A      GG    UUU    UUAUACU AUCCUU GUGUGUCA UG   GGC UAUAUG  GUAU   U    ||||||| |||||| |||||||| ||   ||| ||||||  ||||   U    AAUAUGA UAGGGA CACACAGU AC   CCG AUGUAC  UAUG   G UUU       U      U        U  ---   -      AG    UGU |
Stem-loop sequence | UUUAUACUCAUCCUUUGUGUGUCAUUGAAUGGCAUAUAUGGGGUAUUUUUUGUGUGUAUGACAUGUAGCCCAUUGACACACUAGGGAUUAGUAUAAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008655872.2 |
|
1.0 | PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020547541.1 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
EZ061685.1 |
|
2.5 | TSA: Zea mays contig62807, mRNA sequence | NA | coding protein | psRNATarget |