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BaseInfo

ncRNA ID novel_zma_miR5768
Species Zea mays
Class miRNA
Genome position Chr6:157406881-157406979 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 21
Mature sequence(if miRNA) 1 - UUUAUACUCAUCCUUUGUGUG - 21
Stem-loop(if miRNA) --U       C      U        U  AAU   A      GG    UUU
   UUAUACU AUCCUU GUGUGUCA UG   GGC UAUAUG  GUAU   U
   ||||||| |||||| |||||||| ||   ||| ||||||  ||||   U
   AAUAUGA UAGGGA CACACAGU AC   CCG AUGUAC  UAUG   G
UUU       U      U        U  ---   -      AG    UGU
Stem-loop sequence UUUAUACUCAUCCUUUGUGUGUCAUUGAAUGGCAUAUAUGGGGUAUUUUUUGUGUGUAUGACAUGUAGCCCAUUGACACACUAGGGAUUAGUAUAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008655872.2
ncRNA:21   GUGUGUUUCCUACUCAUAUUU   1
  |||||||=|||||||||||||
targets:1183   CACACAAGGGAUGAGUAUAAA   1203

1.0 PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA NA coding protein psRNATarget
XM_020547541.1
ncRNA:21   GUGUGUUUCCUACUCAUAUUU   1
  |||||||=|*|||||||||||
targets:4309   CACACAAGGAAUGAGUAUAAA   4329

2.5 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget
EZ061685.1
ncRNA:21   GUGUGUUUCCUACUCAUAUUU   1
  ||||*|||||||||||*||||
targets:19   CACAAAAAGGAUGAGUUUAAA   39

2.5 TSA: Zea mays contig62807, mRNA sequence NA coding protein psRNATarget