Search result

BaseInfo

ncRNA ID novel_zma_miR5765
Species Zea mays
Class miRNA
Genome position Chr5:95206140-95206234 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647388
Length 23
Mature sequence(if miRNA) 73 - UUUCAAUAACUAGAGGAAGCUCU - 95
Stem-loop(if miRNA) --           C      GG GCC  G      U    C    ACU
  GGCUUCUUUUA UUAUUG  A   CA GGCUUC AAUA UAUA   A
  ||||||||||| ||||||  |   || |||||| |||| ||||
  UCGAAGGAGAU AAUAAC  U   GU CCGAGG UUAU AUAU   U
UC           C      UU AUA  A      U    -    AUA
Stem-loop sequence GGCUUCUUUUACUUAUUGGGAGCCCAGGGCUUCUAAUACUAUAACUAUAUAUAUAUAUUUGGAGCCAUGAUAUUUCAAUAACUAGAGGAAGCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU947983.1
ncRNA:23   UCUCGAAGGAGAUCAAUAACUUU   1
  ||-|||||||||||||||||=||
targets:625   AG-GCUUCCUCUAGUUAUUGGAA   646

1.5 Zea mays clone 368195 mRNA sequence NA coding protein psRNATarget
EU940867.1
ncRNA:23   UCUCGAAGGAGAUCAAUAACUUU   1
  ||-|||||||||||||||||=||
targets:1695   AG-GCUUCCUCUAGUUAUUGGAA   1716

1.5 Zea mays clone 1165252 mRNA sequence NA coding protein psRNATarget
AY155581.1
ncRNA:23   UCUCGAAGGAGAUCAAUAACUUU   1
  =||-||||||||||||||||=||
targets:550   GGA-CUUCCUCUAGUUAUUGGAA   571

1.5 Zea mays 1-aminocyclopropane-1-carboxylic acid oxidase (acco1) mRNA, partial cds NA coding protein psRNATarget
EU962914.1
ncRNA:23   UCUCGAAGGAGAUCAAUAACUUU   1
  =||-||||||||||||||||=||
targets:1151   GGA-CUUCCUCUAGUUAUUGGAA   1172

1.5 Zea mays clone 246509 mRNA sequence NA coding protein psRNATarget