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BaseInfo

ncRNA ID	novel_zma_miR5761
Species	Zea mays
Class	miRNA
Genome position	Chr5:43782884-43782943 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647385;SRR2647387;SRR2647388;SRR2647389
Length	24
Mature sequence(if miRNA)	37 - ACUGUCCGGUGAUUUUUAGCCGAC - 60
Stem-loop(if miRNA)	--        --G        U    A       CGGCUGGA   CACCGGAC GUCC GUGCC   ||||||||   |||||||| |||| ||||U   GCCGAUUU   GUGGCCUG CAGG CGCGC CA        UUA        U    -
Stem-loop sequence	CGGCUGGAGCACCGGACUGUCCAGUGCCUCGCGCGGACUGUCCGGUGAUUUUUAGCCGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962912.1	ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1   ||-=||||||||||||||||||*|| targets:495   GUAUGGCUAAAAAUCACCGGACCGU   519 Target Full Sequence	1.5	Zea mays clone 246496 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   CAGCCGAUUUUUAGUGGCCUGUCA   1   *|||||||*|||||||||*||||| targets:833   AUCGGCUAUAAAUCACCGAACAGU   856 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   CAGCCGAUUUUUAGUGGCCUGUCA   1   *|||||||*|||||||||*||||| targets:1204   AUCGGCUAUAAAUCACCGAACAGU   1227 Target Full Sequence	2.5	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ105730.1	ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1   ||-||*|||*||||||||||||*|| targets:34   GUACGACUAUAAAUCACCGGACUGU   58 Target Full Sequence	2.5	TSA: Zea mays contig41388, mRNA sequence	NA	coding protein	psRNATarget
EZ109324.1	ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1   ||-||*|||*||||||||||||*|| targets:8   GUACGACUAUAAAUCACCGGACUGU   32 Target Full Sequence	2.5	TSA: Zea mays contig44983, mRNA sequence	NA	coding protein	psRNATarget
BT066975.1	ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1   ||-||*|||*||||||||||||*|| targets:2260   GUACGACUAUAAAUCACCGGACUGU   2284 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176009.1	ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1   ||-||*|||*||||||||||||*|| targets:2260   GUACGACUAUAAAUCACCGGACUGU   2284 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA	NA	coding protein	psRNATarget