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BaseInfo

ncRNA ID novel_zma_miR5761
Species Zea mays
Class miRNA
Genome position Chr5:43782884-43782943 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647385;SRR2647387;SRR2647388;SRR2647389
Length 24
Mature sequence(if miRNA) 37 - ACUGUCCGGUGAUUUUUAGCCGAC - 60
Stem-loop(if miRNA) --        --G        U    A    
  CGGCUGGA   CACCGGAC GUCC GUGCC
  ||||||||   |||||||| |||| ||||U
  GCCGAUUU   GUGGCCUG CAGG CGCGC
CA        UUA        U    -    
Stem-loop sequence CGGCUGGAGCACCGGACUGUCCAGUGCCUCGCGCGGACUGUCCGGUGAUUUUUAGCCGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU962912.1
ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1
  ||-=||||||||||||||||||*||
targets:495   GUAUGGCUAAAAAUCACCGGACCGU   519

1.5 Zea mays clone 246496 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   CAGCCGAUUUUUAGUGGCCUGUCA   1
  *|||||||*|||||||||*|||||
targets:833   AUCGGCUAUAAAUCACCGAACAGU   856

2.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   CAGCCGAUUUUUAGUGGCCUGUCA   1
  *|||||||*|||||||||*|||||
targets:1204   AUCGGCUAUAAAUCACCGAACAGU   1227

2.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ105730.1
ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1
  ||-||*|||*||||||||||||*||
targets:34   GUACGACUAUAAAUCACCGGACUGU   58

2.5 TSA: Zea mays contig41388, mRNA sequence NA coding protein psRNATarget
EZ109324.1
ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1
  ||-||*|||*||||||||||||*||
targets:8   GUACGACUAUAAAUCACCGGACUGU   32

2.5 TSA: Zea mays contig44983, mRNA sequence NA coding protein psRNATarget
BT066975.1
ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1
  ||-||*|||*||||||||||||*||
targets:2260   GUACGACUAUAAAUCACCGGACUGU   2284

2.5 Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds NA coding protein psRNATarget
NM_001176009.1
ncRNA:24   CA-GCCGAUUUUUAGUGGCCUGUCA   1
  ||-||*|||*||||||||||||*||
targets:2260   GUACGACUAUAAAUCACCGGACUGU   2284

2.5 Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA NA coding protein psRNATarget