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BaseInfo

ncRNA ID novel_zma_miR5760
Species Zea mays
Class miRNA
Genome position Chr5:2604789-2604985 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 174 - UUUCUACGGCCUACUCUAGGAAGU - 197
Stem-loop(if miRNA) --      C    UAC  -                -AG   -   A    C     UAGUCAAA GAAAGCUAACUUUCUACGGCCGGCUCUAGGAAGUUAG
  UUUCUA GGCC   UC UAGGAAGUUAGAUUUU   UUG CUG UCCA GGUUG        C                                     C
  |||||| ||||   || ||||||||||||||||   ||| ||| |||| |||||        |
  AAGGAU UCGG   AG AUCCUUCAAUCUAAAA   AAC GAU AGGU UCGAC        A                                     A
UG      C    -CC  C                GCA   U   C    U     ---UUUAU UUGAAGGAUGUCCUCCGGCAUCUUUUAAUCGACAGGU
Stem-loop sequence UUUCUACGGCCUACUCUAGGAAGUUAGAUUUUAGUUGCUGAUCCACGGUUGUAGUCAAACGAAAGCUAACUUUCUACGGCCGGCUCUAGGAAGUUAGCAUGGACAGCUAAUUUUCUACGGCCUCCUGUAGGAAGUUAUAUUUCAGCUUUGGACUAGUCAAACGAAAAUCUAACUUCCUACGACCGGCUCUAGGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   UGAAGGAUCUCAUCCGGCAUCUUU   1
  ||||=||||||||||||||||=||
targets:1019   ACUUUCUAGAGUAGGCCGUAGGAA   1042

1.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget